Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 1U0    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1B PB O P doub 1.48 N N
2 O9 C8 O C sing 1.43 N N
3 O2B PB O P sing 1.61 N N
4 PB O3A P O sing 1.61 N N
5 PB O3B P O sing 1.61 N N
6 O3A PA O P sing 1.61 N N
7 C9 C8 C C sing 1.53 N N
8 C9 O10 C O sing 1.43 N N
9 N4' C4' N C sing 1.39 N N
10 C8 C2 C C sing 1.51 N N
11 O1A PA O P doub 1.48 N N
12 S1 C2 S C sing 1.76 N Y
13 S1 C5 S C sing 1.76 N Y
14 PA O2A P O sing 1.61 N N
15 PA O7 P O sing 1.61 N N
16 N3' C4' N C doub 1.33 N Y
17 N3' C2' N C sing 1.32 N Y
18 C2 C3 C C doub 1.33 N Y
19 C4' C5' C C sing 1.4 N Y
20 C7 O7 C O sing 1.43 N N
21 C7 C6 C C sing 1.53 N N
22 CM2 C2' C C sing 1.51 N N
23 C2' N1' C N doub 1.32 N Y
24 C5 C6 C C sing 1.51 N N
25 C5 C4 C C doub 1.33 N Y
26 C3 C7' C C sing 1.51 N N
27 C3 C4 C C sing 1.38 N Y
28 C5' C7' C C sing 1.51 N N
29 C5' C6' C C doub 1.38 N Y
30 C4 CM4 C C sing 1.51 N N
31 N1' C6' N C sing 1.33 N Y
32 O3B H1 O H sing 0.97 N N
33 O2B H2 O H sing 0.97 N N
34 O2A H3 O H sing 0.97 N N
35 C7 H4 C H sing 1.09 N N
36 C7 H5 C H sing 1.09 N N
37 C6 H6 C H sing 1.09 N N
38 C6 H7 C H sing 1.09 N N
39 CM4 H8 C H sing 1.09 N N
40 CM4 H9 C H sing 1.09 N N
41 CM4 H10 C H sing 1.09 N N
42 C8 H11 C H sing 1.09 N N
43 O9 H12 O H sing 0.97 N N
44 C7' H13 C H sing 1.09 N N
45 C7' H14 C H sing 1.09 N N
46 C6' H15 C H sing 1.08 N N
47 CM2 H16 C H sing 1.09 N N
48 CM2 H17 C H sing 1.09 N N
49 CM2 H18 C H sing 1.09 N N
50 N4' H19 N H sing 0.97 N N
51 N4' H20 N H sing 0.97 N N
52 C9 H21 C H sing 1.09 N N
53 C9 H22 C H sing 1.09 N N
54 O10 H23 O H sing 0.97 N N