Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 1RK    

Bonds between two atoms of the molecule

Total Number of Bonds: 77


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 N1 C N sing 1.47 N N
2 N1 C3 N C sing 1.47 N N
3 O8 C5 O C doub 1.21 N N
4 C3 C5 C C sing 1.51 N N
5 C3 C4 C C sing 1.53 N N
6 C5 N6 C N sing 1.35 N N
7 C19 C20 C C doub 1.38 N Y
8 C19 C21 C C sing 1.38 N Y
9 C20 C18 C C sing 1.38 N Y
10 C21 C12 C C doub 1.38 N Y
11 C22 C23 C C sing 1.53 N N
12 C22 C9 C C sing 1.53 N N
13 C18 C11 C C doub 1.38 N Y
14 N6 C7 N C sing 1.46 N N
15 C23 O24 C O sing 1.43 N N
16 C7 C9 C C sing 1.52 N N
17 C7 C16 C C sing 1.51 N N
18 C12 C11 C C sing 1.39 N Y
19 C12 N13 C N sing 1.4 N N
20 C11 O10 C O sing 1.36 N N
21 C9 O10 C O sing 1.43 N N
22 C9 C26 C C sing 1.53 N N
23 C29 O28 C O sing 1.43 N N
24 N13 C16 N C sing 1.35 N N
25 N13 C14 N C sing 1.47 N N
26 C16 O17 C O doub 1.21 N N
27 O28 C27 O C sing 1.36 N N
28 O24 C25 O C sing 1.43 N N
29 C14 C15 C C sing 1.51 N N
30 C26 C25 C C sing 1.53 N N
31 C27 C15 C C doub 1.38 N Y
32 C27 C30 C C sing 1.4 N Y
33 C15 C33 C C sing 1.4 N Y
34 C30 C31 C C doub 1.36 N Y
35 C33 C37 C C doub 1.41 N Y
36 C33 C32 C C sing 1.42 N Y
37 C37 C36 C C sing 1.36 N Y
38 C31 C32 C C sing 1.41 N Y
39 C32 C34 C C doub 1.4 N Y
40 C36 C35 C C doub 1.41 N Y
41 C34 C35 C C sing 1.39 N Y
42 C35 C38 C C sing 1.48 N N
43 C38 O40 C O doub 1.21 N N
44 C38 O39 C O sing 1.35 N N
45 C29 H1 C H sing 1.09 N N
46 C29 H2 C H sing 1.09 N N
47 C29 H3 C H sing 1.09 N N
48 C30 H4 C H sing 1.08 N N
49 C31 H5 C H sing 1.08 N N
50 C34 H6 C H sing 1.08 N N
51 O39 H7 O H sing 0.97 N N
52 C36 H8 C H sing 1.08 N N
53 C37 H9 C H sing 1.08 N N
54 C14 H10 C H sing 1.09 N N
55 C14 H11 C H sing 1.09 N N
56 C21 H12 C H sing 1.08 N N
57 C19 H13 C H sing 1.08 N N
58 C20 H14 C H sing 1.08 N N
59 C18 H15 C H sing 1.08 N N
60 C22 H16 C H sing 1.09 N N
61 C22 H17 C H sing 1.09 N N
62 C23 H18 C H sing 1.09 N N
63 C23 H19 C H sing 1.09 N N
64 C25 H20 C H sing 1.09 N N
65 C25 H21 C H sing 1.09 N N
66 C26 H22 C H sing 1.09 N N
67 C26 H23 C H sing 1.09 N N
68 C7 H24 C H sing 1.09 N N
69 N6 H25 N H sing 0.97 N N
70 C3 H26 C H sing 1.09 N N
71 C4 H27 C H sing 1.09 N N
72 C4 H28 C H sing 1.09 N N
73 C4 H29 C H sing 1.09 N N
74 N1 H30 N H sing 1.01 N N
75 C2 H32 C H sing 1.09 N N
76 C2 H33 C H sing 1.09 N N
77 C2 H34 C H sing 1.09 N N