Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 1OJ    

Bonds between two atoms of the molecule

Total Number of Bonds: 74


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C34 C33 C C doub 1.3819569 N Y
2 C34 C35 C C sing 1.3826417 N Y
3 C33 C32 C C sing 1.3821903 N Y
4 C35 C36 C C doub 1.3826022 N Y
5 C25 C24 C C sing 1.5298892 N N
6 O31 S29 O S doub 1.420938 N N
7 C32 C37 C C doub 1.3818238 N Y
8 C32 S29 C S sing 1.7617917 N N
9 C36 C37 C C sing 1.3821234 N Y
10 C36 S38 C S sing 1.7620105 N N
11 N41 S38 N S sing 1.6560571 N N
12 C24 O23 C O sing 1.428341 N N
13 O14 C13 O C doub 1.2122825 N N
14 O40 S38 O S doub 1.4213043 N N
15 S29 O30 S O doub 1.4210662 N N
16 S29 N15 S N sing 1.6558819 N N
17 S38 O39 S O doub 1.4207519 N N
18 O23 C18 O C sing 1.3597606 N N
19 C13 N15 C N sing 1.3475047 N N
20 C13 C12 C C sing 1.5071493 N N
21 C17 C18 C C doub 1.385817 N Y
22 C17 C16 C C sing 1.3821107 N Y
23 C18 C19 C C sing 1.391801 N Y
24 N11 C12 N C sing 1.4651133 N N
25 N11 C9 N C sing 1.3935171 N N
26 C12 C16 C C sing 1.5074432 N N
27 C16 C21 C C doub 1.3825483 N Y
28 O22 C19 O C sing 1.359761 N N
29 O22 C26 O C sing 1.4289885 N N
30 C19 C20 C C doub 1.3856417 N Y
31 C9 C10 C C doub 1.3796235 N Y
32 C9 C8 C C sing 1.401076 N Y
33 C10 C5 C C sing 1.4008359 N Y
34 C21 C20 C C sing 1.3825535 N Y
35 C28 C26 C C sing 1.529531 N N
36 C26 C27 C C sing 1.5300418 N N
37 C8 C7 C C doub 1.3592516 N Y
38 C5 C6 C C doub 1.408059 N Y
39 C5 C4 C C sing 1.4198134 N Y
40 C6 C1 C C sing 1.3619082 N Y
41 C7 C4 C C sing 1.4041086 N Y
42 C4 C3 C C doub 1.4034133 N Y
43 C1 N2 C N doub 1.3251646 N Y
44 C3 N2 C N sing 1.3133979 N Y
45 C17 H1 C H sing 1.0797356 N N
46 C20 H2 C H sing 1.0796231 N N
47 C21 H3 C H sing 1.080119 N N
48 C24 H4 C H sing 1.0908772 N N
49 C24 H5 C H sing 1.0902367 N N
50 C12 H6 C H sing 1.0898395 N N
51 C34 H7 C H sing 1.0795966 N N
52 C27 H8 C H sing 1.0902953 N N
53 C27 H9 C H sing 1.089872 N N
54 C27 H10 C H sing 1.0897918 N N
55 C33 H11 C H sing 1.0798273 N N
56 C1 H12 C H sing 1.0801569 N N
57 C3 H13 C H sing 1.0796865 N N
58 C6 H14 C H sing 1.0800166 N N
59 C7 H15 C H sing 1.0801606 N N
60 C8 H16 C H sing 1.0802537 N N
61 C10 H17 C H sing 1.0796976 N N
62 N11 H18 N H sing 0.9699701 N N
63 N15 H19 N H sing 0.9710252 N N
64 C25 H20 C H sing 1.0894719 N N
65 C25 H21 C H sing 1.0906044 N N
66 C25 H22 C H sing 1.090017 N N
67 C26 H23 C H sing 1.0905471 N N
68 C28 H24 C H sing 1.089505 N N
69 C28 H25 C H sing 1.0906475 N N
70 C28 H26 C H sing 1.0895035 N N
71 C35 H27 C H sing 1.0795448 N N
72 C37 H28 C H sing 1.0805604 N N
73 N41 H29 N H sing 0.970302 N N
74 N41 H30 N H sing 0.9698773 N N