Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 1O9    

Bonds between two atoms of the molecule

Total Number of Bonds: 70


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O7 C6 O C doub 1.21 N N
2 O8 C6 O C sing 1.34 N N
3 C6 C2 C C sing 1.51 N N
4 C24 N25 C N sing 1.32 N Y
5 C24 C23 C C doub 1.34 N Y
6 N25 C21 N C doub 1.29 N Y
7 C28 N27 C N doub 1.32 N Y
8 C28 C29 C C sing 1.38 N Y
9 N27 C26 N C sing 1.32 N Y
10 C3 C2 C C sing 1.54 N N
11 C3 C4 C C sing 1.55 N N
12 C23 S22 C S sing 1.76 N Y
13 C2 C9 C C sing 1.53 N N
14 C2 N1 C N sing 1.47 N N
15 C29 N30 C N doub 1.32 N Y
16 C9 C10 C C sing 1.53 N N
17 C21 C5 C C sing 1.51 N N
18 C21 S22 C S sing 1.71 N Y
19 C26 C4 C C sing 1.51 N N
20 C26 C31 C C doub 1.38 N Y
21 C4 C5 C C sing 1.55 N N
22 N1 C5 N C sing 1.47 N N
23 N1 C13 N C sing 1.35 N N
24 O14 C13 O C doub 1.22 N N
25 C13 C15 C C sing 1.48 N N
26 N30 C31 N C sing 1.32 N Y
27 C10 C12 C C sing 1.53 N N
28 C10 C11 C C sing 1.53 N N
29 C16 C15 C C doub 1.4 N Y
30 C16 C17 C C sing 1.38 N Y
31 C15 C20 C C sing 1.4 N Y
32 C17 C18 C C doub 1.38 N Y
33 C20 C19 C C doub 1.38 N Y
34 C18 C19 C C sing 1.38 N Y
35 C18 C32 C C sing 1.51 N N
36 C33 C32 C C sing 1.53 N N
37 C32 C34 C C sing 1.53 N N
38 C32 C35 C C sing 1.53 N N
39 C3 H1 C H sing 1.09 N N
40 C3 H2 C H sing 1.09 N N
41 C4 H3 C H sing 1.09 N N
42 C5 H4 C H sing 1.09 N N
43 O8 H5 O H sing 0.97 N N
44 C9 H6 C H sing 1.09 N N
45 C9 H7 C H sing 1.09 N N
46 C10 H8 C H sing 1.09 N N
47 C11 H9 C H sing 1.09 N N
48 C11 H10 C H sing 1.09 N N
49 C11 H11 C H sing 1.09 N N
50 C12 H12 C H sing 1.09 N N
51 C12 H13 C H sing 1.09 N N
52 C12 H14 C H sing 1.09 N N
53 C16 H15 C H sing 1.08 N N
54 C17 H16 C H sing 1.08 N N
55 C19 H17 C H sing 1.08 N N
56 C20 H18 C H sing 1.08 N N
57 C23 H19 C H sing 1.08 N N
58 C24 H20 C H sing 1.08 N N
59 C28 H21 C H sing 1.08 N N
60 C29 H22 C H sing 1.08 N N
61 C31 H23 C H sing 1.08 N N
62 C33 H24 C H sing 1.09 N N
63 C33 H25 C H sing 1.09 N N
64 C33 H26 C H sing 1.09 N N
65 C34 H27 C H sing 1.09 N N
66 C34 H28 C H sing 1.09 N N
67 C34 H29 C H sing 1.09 N N
68 C35 H30 C H sing 1.09 N N
69 C35 H31 C H sing 1.09 N N
70 C35 H32 C H sing 1.09 N N