Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 1O8    

Bonds between two atoms of the molecule

Total Number of Bonds: 45


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C19 C9 C C sing 1.51 N N
2 C10 C9 C C doub 1.36 Z N
3 C10 C11 C C sing 1.4 N N
4 C12 C11 C C doub 1.36 E N
5 C12 C13 C C sing 1.4 N N
6 C9 C8 C C sing 1.41 N N
7 C14 C13 C C doub 1.36 E N
8 C14 C15 C C sing 1.41 N N
9 C13 C20 C C sing 1.51 N N
10 O1 C15 O C doub 1.22 N N
11 C15 O2 C O sing 1.35 N N
12 C2' C1' C C sing 1.53 N N
13 C2' C7 C C sing 1.51 N N
14 C8 C7 C C doub 1.36 E N
15 C1' C18 C C sing 1.53 N N
16 C7 C6 C C sing 1.47 N N
17 C18 C5 C C sing 1.5 N N
18 C6 C5 C C doub 1.4 N Y
19 C6 C1 C C sing 1.4 N Y
20 C5 C4 C C sing 1.38 N Y
21 C1 C2 C C doub 1.38 N Y
22 C4 C3 C C doub 1.38 N Y
23 C2 C3 C C sing 1.38 N Y
24 C2' H1 C H sing 1.09 N N
25 C2' H2 C H sing 1.09 N N
26 C1' H3 C H sing 1.09 N N
27 C1' H4 C H sing 1.09 N N
28 C18 H5 C H sing 1.09 N N
29 C18 H6 C H sing 1.09 N N
30 C4 H7 C H sing 1.08 N N
31 C3 H8 C H sing 1.08 N N
32 C2 H9 C H sing 1.08 N N
33 C1 H10 C H sing 1.08 N N
34 C8 H11 C H sing 1.08 N N
35 C19 H12 C H sing 1.09 N N
36 C19 H13 C H sing 1.09 N N
37 C19 H14 C H sing 1.09 N N
38 C10 H15 C H sing 1.08 N N
39 C11 H16 C H sing 1.08 N N
40 C12 H17 C H sing 1.08 N N
41 C20 H18 C H sing 1.09 N N
42 C20 H19 C H sing 1.09 N N
43 C20 H20 C H sing 1.09 N N
44 C14 H21 C H sing 1.08 N N
45 O2 H22 O H sing 0.97 N N