Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 1NJ    

Bonds between two atoms of the molecule

Total Number of Bonds: 72


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O56 C53 O C sing 1.4291284 N N
2 C53 C51 C C sing 1.5299098 N N
3 O41 C40 O C doub 1.2145209 N N
4 C63 C58 C C sing 1.5301197 N N
5 C29 C31 C C doub 1.3794978 N Y
6 C29 C23 C C sing 1.3947219 N Y
7 C31 C33 C C sing 1.4011855 N Y
8 C51 N49 C N sing 1.4647324 N N
9 C51 C58 C C sing 1.5294447 N N
10 N49 C47 N C sing 1.3471974 N N
11 O24 C23 O C sing 1.3560306 N N
12 O24 C25 O C sing 1.4286809 N N
13 C40 C39 C C sing 1.4757577 N N
14 C40 O43 C O sing 1.3473414 N N
15 C58 C67 C C sing 1.5303676 N N
16 C58 C59 C C sing 1.5296676 N N
17 C23 N22 C N doub 1.3196383 N Y
18 C39 C44 C C doub 1.3908408 N Y
19 C39 C34 C C sing 1.4102911 N Y
20 C33 C34 C C sing 1.4783769 N N
21 C33 C21 C C doub 1.4036449 N Y
22 C44 C46 C C sing 1.3940133 N Y
23 C34 C35 C C doub 1.393798 N Y
24 C46 C47 C C sing 1.4770633 N N
25 C46 C37 C C doub 1.3980515 N Y
26 C47 O48 C O doub 1.2166581 N N
27 C35 C37 C C sing 1.3774618 N Y
28 N22 C21 N C sing 1.3265723 N Y
29 C21 C2 C C sing 1.4802763 N N
30 C2 N3 C N sing 1.3471547 N N
31 C2 O1 C O doub 1.2149938 N N
32 N3 C5 N C sing 1.3949441 N N
33 C19 C5 C C doub 1.3903571 N Y
34 C19 C17 C C sing 1.3776045 N Y
35 C5 C6 C C sing 1.3910234 N Y
36 C17 C10 C C doub 1.3966237 N Y
37 C6 C8 C C doub 1.3777115 N Y
38 C10 C8 C C sing 1.3958274 N Y
39 C10 C11 C C sing 1.4792587 N N
40 N15 C11 N C doub 1.3036153 N N
41 C11 N12 C N sing 1.3779212 N N
42 N3 H1 N H sing 0.97039014 N N
43 C6 H2 C H sing 1.0801454 N N
44 C8 H3 C H sing 1.0799676 N N
45 N12 H4 N H sing 0.9694808 N N
46 N12 H5 N H sing 0.9704375 N N
47 N15 H6 N H sing 0.96944106 N N
48 C17 H7 C H sing 1.0797902 N N
49 C19 H8 C H sing 1.080419 N N
50 C25 H9 C H sing 1.0898854 N N
51 C25 H10 C H sing 1.0896618 N N
52 C25 H11 C H sing 1.0904852 N N
53 C29 H12 C H sing 1.0799357 N N
54 C31 H13 C H sing 1.0808039 N N
55 C35 H14 C H sing 1.0802152 N N
56 C37 H15 C H sing 1.0798504 N N
57 O43 H16 O H sing 0.967565 N N
58 C44 H17 C H sing 1.080025 N N
59 N49 H18 N H sing 0.97008765 N N
60 C51 H19 C H sing 1.0900413 N N
61 C53 H20 C H sing 1.0903444 N N
62 C53 H21 C H sing 1.0905902 N N
63 O56 H22 O H sing 0.9666592 N N
64 C59 H23 C H sing 1.0899179 N N
65 C59 H24 C H sing 1.0898519 N N
66 C59 H25 C H sing 1.0902563 N N
67 C63 H26 C H sing 1.0898904 N N
68 C63 H27 C H sing 1.0903074 N N
69 C63 H28 C H sing 1.0899179 N N
70 C67 H29 C H sing 1.090039 N N
71 C67 H30 C H sing 1.0897183 N N
72 C67 H31 C H sing 1.0904403 N N