Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 1JD    

Bonds between two atoms of the molecule

Total Number of Bonds: 58


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.51 N N
2 C3 C2 C C doub 1.39 N Y
3 C3 C4 C C sing 1.38 N Y
4 C2 C6 C C sing 1.38 N Y
5 C4 C5 C C doub 1.39 N Y
6 C6 N1 C N doub 1.32 N Y
7 O1 C7 O C doub 1.21 N N
8 C5 N1 C N sing 1.32 N Y
9 C5 N2 C N sing 1.39 N N
10 C11 C10 C C sing 1.53 N N
11 C7 N2 C N sing 1.35 N N
12 C7 C8 C C sing 1.51 N N
13 C9 C8 C C sing 1.53 N N
14 C9 O2 C O sing 1.43 N N
15 C10 O2 C O sing 1.43 N N
16 C10 C12 C C sing 1.53 N N
17 CL1 C19 CL C sing 1.74 N N
18 C8 O3 C O sing 1.43 N N
19 C15 N3 C N doub 1.3 N Y
20 C15 C14 C C sing 1.46 N Y
21 O3 C13 O C sing 1.35 N N
22 N3 N4 N N sing 1.4 N Y
23 C14 C13 C C doub 1.4 N Y
24 C14 C16 C C sing 1.41 N Y
25 C13 N6 C N sing 1.33 N Y
26 N4 C16 N C sing 1.36 N Y
27 N4 C18 N C sing 1.4 N N
28 C19 C20 C C doub 1.38 N Y
29 C19 C18 C C sing 1.39 N Y
30 C16 N5 C N doub 1.33 N Y
31 N6 C17 N C doub 1.32 N Y
32 C20 C21 C C sing 1.39 N Y
33 C18 N7 C N doub 1.32 N Y
34 C17 N5 C N sing 1.32 N Y
35 N7 C22 N C sing 1.32 N Y
36 C21 C22 C C doub 1.38 N Y
37 C1 H1 C H sing 1.09 N N
38 C1 H2 C H sing 1.09 N N
39 C1 H3 C H sing 1.09 N N
40 C3 H4 C H sing 1.08 N N
41 C4 H5 C H sing 1.08 N N
42 C6 H6 C H sing 1.08 N N
43 N2 H7 N H sing 0.97 N N
44 C8 H8 C H sing 1.09 N N
45 C9 H9 C H sing 1.09 N N
46 C9 H10 C H sing 1.09 N N
47 C10 H11 C H sing 1.09 N N
48 C11 H12 C H sing 1.09 N N
49 C11 H13 C H sing 1.09 N N
50 C11 H14 C H sing 1.09 N N
51 C12 H15 C H sing 1.09 N N
52 C12 H16 C H sing 1.09 N N
53 C12 H17 C H sing 1.09 N N
54 C15 H18 C H sing 1.08 N N
55 C17 H19 C H sing 1.08 N N
56 C20 H20 C H sing 1.08 N N
57 C21 H21 C H sing 1.08 N N
58 C22 H22 C H sing 1.08 N N