Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 1HA    

Bonds between two atoms of the molecule

Total Number of Bonds: 107


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OAI PCI O P doub 1.480229 N N
2 OAP PCI O P sing 1.6098093 N N
3 PCI OBN P O sing 1.6095937 N N
4 PCI OBK P O sing 1.6101693 N N
5 OAO PCH O P doub 1.4791582 N N
6 OBN PCH O P sing 1.6099743 N N
7 OBK CBD O C sing 1.4290252 N N
8 PCH OAH P O sing 1.6102959 N N
9 PCH O5' P O sing 1.6097702 N N
10 CBD CCF C C sing 1.530377 N N
11 CAB CCF C C sing 1.5295882 N N
12 C5' O5' C O sing 1.4292268 N N
13 C5' C4' C C sing 1.5300814 N N
14 OAM PCG O P doub 1.4802408 N N
15 CCF CBZ C C sing 1.5302359 N N
16 CCF CAA C C sing 1.5294166 N N
17 C4' C3' C C sing 1.5449803 N N
18 C4' O4' C O sing 1.4445103 N N
19 CBZ OAK C O sing 1.4289051 N N
20 CBZ CBQ C C sing 1.5067698 N N
21 C3' O3' C O sing 1.4287914 N N
22 C3' C2' C C sing 1.5453572 N N
23 PCG OAN P O sing 1.610255 N N
24 PCG O3' P O sing 1.6106167 N N
25 PCG OAG P O sing 1.6098009 N N
26 O4' C1' O C sing 1.44418 N N
27 OAE CBQ O C doub 1.2121617 N N
28 CBQ NBI C N sing 1.34834 N N
29 C2' C1' C C sing 1.5448763 N N
30 C2' O2' C O sing 1.4287498 N N
31 C1' N9 C N sing 1.4651532 N N
32 C8 N9 C N sing 1.3641033 N Y
33 C8 N7 C N doub 1.3015844 N Y
34 NBI CAZ N C sing 1.4656838 N N
35 N9 C4 N C sing 1.3717948 N Y
36 N7 C5 N C sing 1.3550177 N Y
37 CAZ CBB C C sing 1.5293231 N N
38 C4 C5 C C doub 1.4049747 N Y
39 C4 N3 C N sing 1.3282914 N Y
40 CBB CBP C C sing 1.5064794 N N
41 C5 C6 C C sing 1.4052409 N Y
42 N3 C2 N C doub 1.316403 N Y
43 CBP OAD C O doub 1.2132943 N N
44 CBP NBH C N sing 1.3478167 N N
45 C6 N6 C N sing 1.3843042 N N
46 C6 N1 C N doub 1.3288243 N Y
47 C2 N1 C N sing 1.3200488 N Y
48 NBH CAY N C sing 1.4649512 N N
49 CAY CBA C C sing 1.5306942 N N
50 CBA SBO C S sing 1.8097724 N N
51 OAF CBR O C doub 1.2169166 N N
52 SBO CBR S C sing 1.761905 N N
53 CBR CBU C C sing 1.4723152 N N
54 CBU CBT C C doub 1.3921655 N Y
55 CBU CAT C C sing 1.4074328 N Y
56 OAJ CBT O C sing 1.3548868 N N
57 CBT CBW C C sing 1.4099369 N Y
58 CAT CAW C C doub 1.3565161 N Y
59 CAW CBV C C sing 1.4085901 N Y
60 CBW CBV C C doub 1.4168323 N Y
61 CBW CAV C C sing 1.404616 N Y
62 CBV CAU C C sing 1.4033232 N Y
63 CAV CAR C C doub 1.3625656 N Y
64 CAU CAQ C C doub 1.3621553 N Y
65 CAR CAQ C C sing 1.3926702 N Y
66 OAJ H1 O H sing 0.9667585 N N
67 CAV H2 C H sing 1.0797148 N N
68 CAR H3 C H sing 1.0798504 N N
69 CAQ H4 C H sing 1.0802009 N N
70 CAU H5 C H sing 1.0804453 N N
71 CAW H6 C H sing 1.0801787 N N
72 CAT H7 C H sing 1.0800778 N N
73 CBA H8 C H sing 1.0895807 N N
74 CBA H9 C H sing 1.0896302 N N
75 CAY H10 C H sing 1.0901537 N N
76 CAY H11 C H sing 1.0892204 N N
77 NBH H12 N H sing 0.9698753 N N
78 CBB H13 C H sing 1.0902958 N N
79 CBB H14 C H sing 1.0896302 N N
80 CAZ H15 C H sing 1.0897532 N N
81 CAZ H16 C H sing 1.0900033 N N
82 NBI H17 N H sing 0.9698753 N N
83 CBZ H18 C H sing 1.0905164 N N
84 OAK H19 O H sing 0.9672688 N N
85 CAA H20 C H sing 1.0903968 N N
86 CAA H21 C H sing 1.0900335 N N
87 CAA H22 C H sing 1.0902555 N N
88 CAB H23 C H sing 1.0900509 N N
89 CAB H24 C H sing 1.0909055 N N
90 CAB H25 C H sing 1.0899752 N N
91 CBD H26 C H sing 1.0903715 N N
92 CBD H27 C H sing 1.0899678 N N
93 OAP H28 O H sing 0.9667166 N N
94 OAH H29 O H sing 0.96728176 N N
95 C5' H30 C H sing 1.090056 N N
96 C5' H31 C H sing 1.0902774 N N
97 C4' H32 C H sing 1.0892112 N N
98 C3' H33 C H sing 1.0893604 N N
99 OAN H34 O H sing 0.96729517 N N
100 OAG H35 O H sing 0.9666111 N N
101 C2' H36 C H sing 1.0901339 N N
102 O2' H37 O H sing 0.96674764 N N
103 C1' H38 C H sing 1.089599 N N
104 C8 H39 C H sing 1.0788934 N N
105 C2 H40 C H sing 1.080373 N N
106 N6 H41 N H sing 0.9690201 N N
107 N6 H42 N H sing 0.9702953 N N