Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 1CV    

Bonds between two atoms of the molecule

Total Number of Bonds: 106


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 S1P C1 S C sing 1.81 N N
2 C1 C2 C C sing 1.53 N N
3 C1 S2 C S sing 1.81 N N
4 C1 H1 C H sing 1.09 N N
5 C3 C2 C C sing 1.53 N N
6 C2 H2 C H sing 1.09 N N
7 C2 H2A C H sing 1.09 N N
8 S2 HS2 S H sing 1.34 N N
9 C6 C3 C C sing 1.53 N N
10 O7 C3 O C sing 1.43 N N
11 C3 C4 C C sing 1.53 N N
12 O3 C5 O C doub 1.21 N N
13 C5 C4 C C sing 1.51 N N
14 C4 H4 C H sing 1.09 N N
15 C4 H4A C H sing 1.09 N N
16 C5 O4 C O sing 1.34 N N
17 O4 HO4 O H sing 0.97 N N
18 C6 H6 C H sing 1.09 N N
19 C6 H6A C H sing 1.09 N N
20 C6 H6B C H sing 1.09 N N
21 O7 HO7 O H sing 0.97 N N
22 O4' C1' O C sing 1.44 N N
23 N9A C1' N C sing 1.47 N N
24 C1' C2' C C sing 1.55 N N
25 C1' H1' C H sing 1.09 N N
26 O10 C10 O C sing 1.43 N N
27 C10 C11 C C sing 1.53 N N
28 C10 C9P C C sing 1.51 N N
29 C10 H10 C H sing 1.09 N N
30 O10 HO10 O H sing 0.97 N N
31 C12 C11 C C sing 1.53 N N
32 C11 C13 C C sing 1.53 N N
33 C11 C14 C C sing 1.53 N N
34 O6A C12 O C sing 1.43 N N
35 C12 H12 C H sing 1.09 N N
36 C12 H12A C H sing 1.09 N N
37 C13 H13 C H sing 1.09 N N
38 C13 H13A C H sing 1.09 N N
39 C13 H13B C H sing 1.09 N N
40 C14 H14 C H sing 1.09 N N
41 C14 H14A C H sing 1.09 N N
42 C14 H14B C H sing 1.09 N N
43 C6A N1A C N doub 1.33 N Y
44 N1A C2A N C sing 1.32 N Y
45 O1A P1A O P doub 1.48 N N
46 O3A P1A O P sing 1.61 N N
47 O2A P1A O P sing 1.61 N N
48 P1A O5' P O sing 1.61 N N
49 S1P C2P S C sing 1.81 N N
50 C3' C2' C C sing 1.55 N N
51 C2' O2' C O sing 1.43 N N
52 C2' H2' C H sing 1.09 N N
53 O2' HO2' O H sing 0.97 N N
54 N3A C2A N C doub 1.32 N Y
55 C2A H2AA C H sing 1.08 N N
56 O2A HO2A O H sing 0.97 N N
57 O5A P2A O P doub 1.48 N N
58 O4A P2A O P sing 1.61 N N
59 P2A O3A P O sing 1.61 N N
60 P2A O6A P O sing 1.61 N N
61 C2P C3P C C sing 1.53 N N
62 C2P H2P C H sing 1.09 N N
63 C2P H2PA C H sing 1.09 N N
64 C4' C3' C C sing 1.54 N N
65 C3' O3' C O sing 1.43 N N
66 C3' H3' C H sing 1.09 N N
67 P3' O3' P O sing 1.61 N N
68 O7A P3' O P doub 1.48 N N
69 O9A P3' O P sing 1.61 N N
70 P3' O8A P O sing 1.61 N N
71 C4A N3A C N sing 1.33 N Y
72 N4P C3P N C sing 1.47 N N
73 C3P H3P C H sing 1.09 N N
74 C3P H3PA C H sing 1.09 N N
75 C5' C4' C C sing 1.53 N N
76 C4' O4' C O sing 1.44 N N
77 C4' H4' C H sing 1.09 N N
78 C5A C4A C C doub 1.41 N Y
79 N9A C4A N C sing 1.37 N Y
80 O4A HO4A O H sing 0.97 N N
81 C5P N4P C N sing 1.35 N N
82 N4P HN4P N H sing 0.97 N N
83 O5' C5' O C sing 1.43 N N
84 C5' H5' C H sing 1.09 N N
85 C5' H5'A C H sing 1.09 N N
86 N7A C5A N C sing 1.35 N Y
87 C5A C6A C C sing 1.4 N Y
88 C6P C5P C C sing 1.51 N N
89 C5P O5P C O doub 1.21 N N
90 N6A C6A N C sing 1.38 N N
91 N6A HN6A N H sing 0.97 N N
92 N6A HN6B N H sing 0.97 N N
93 C7P C6P C C sing 1.53 N N
94 C6P H6P C H sing 1.09 N N
95 C6P H6PA C H sing 1.09 N N
96 N7A C8A N C doub 1.3 N Y
97 N8P C7P N C sing 1.47 N N
98 C7P H7P C H sing 1.09 N N
99 C7P H7PA C H sing 1.09 N N
100 C8A N9A C N sing 1.36 N Y
101 C8A H8A C H sing 1.08 N N
102 O8A HO8A O H sing 0.97 N N
103 N8P C9P N C sing 1.35 N N
104 N8P HN8P N H sing 0.97 N N
105 O9A HO9A O H sing 0.97 N N
106 C9P O9P C O doub 1.21 N N