Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 18Y    

Bonds between two atoms of the molecule

Total Number of Bonds: 93


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C3 C4 C C sing 1.53 N N
2 C3 C2 C C sing 1.53 N N
3 C4 C21 C C sing 1.51 N N
4 C2 C1 C C sing 1.51 N N
5 O10 C19 O C sing 1.36 N N
6 O10 C24 O C sing 1.43 N N
7 C21 C19 C C doub 1.36 N Y
8 C21 C20 C C sing 1.41 N Y
9 C19 C23 C C sing 1.41 N Y
10 C1 C20 C C sing 1.47 N N
11 C1 O1 C O doub 1.21 N N
12 C20 C9 C C doub 1.4 N Y
13 C23 C5 C C doub 1.4 N Y
14 C23 C22 C C sing 1.41 N Y
15 C5 C6 C C sing 1.36 N Y
16 C9 C22 C C sing 1.41 N Y
17 C9 O9 C O sing 1.35 N N
18 C6' C5' C C sing 1.53 N N
19 C22 C8 C C doub 1.41 N Y
20 O4' C4' O C sing 1.43 N N
21 C6 C18 C C sing 1.51 N N
22 C6 C7 C C doub 1.4 N Y
23 O1' C5' O C sing 1.43 N N
24 O1' C1' O C sing 1.43 N N
25 C8 C7 C C sing 1.38 N Y
26 C8 O8 C O sing 1.35 N N
27 C5' C4' C C sing 1.53 N N
28 C7 C11 C C sing 1.5 N N
29 C4' C7' C C sing 1.51 N N
30 C4' C3' C C sing 1.53 N N
31 C1' C2' C C sing 1.53 N N
32 C1' O13 C O sing 1.43 N N
33 O8 C13 O C sing 1.41 N N
34 C8' C7' C C sing 1.51 N N
35 C11 C12 C C sing 1.55 N N
36 C11 O11 C O sing 1.44 N N
37 C2' C3' C C sing 1.53 N N
38 C7' O7' C O doub 1.21 N N
39 C12 C13 C C sing 1.55 N N
40 C12 O12 C O sing 1.48 N N
41 C3' O3' C O sing 1.43 N N
42 C13 O13 C O sing 1.43 N N
43 C13 C14 C C sing 1.55 N N
44 O12 C15 O C sing 1.47 N N
45 O11 C15 O C sing 1.45 N N
46 C14 C15 C C sing 1.56 N N
47 C14 C17 C C sing 1.53 N N
48 C14 O14 C O sing 1.43 N N
49 C15 C25 C C sing 1.53 N N
50 C25 O16 C O sing 1.43 N N
51 C25 O26 C O sing 1.43 N N
52 C28 O16 C O sing 1.43 N N
53 O26 C27 O C sing 1.43 N N
54 C3 H3A C H sing 1.09 N N
55 C3 H3B C H sing 1.09 N N
56 C5 H5 C H sing 1.08 N N
57 C8' H81' C H sing 1.09 N N
58 C8' H82' C H sing 1.09 N N
59 C8' H83' C H sing 1.09 N N
60 C2 H2B C H sing 1.09 N N
61 C2 H2A C H sing 1.09 N N
62 C4 H4A C H sing 1.09 N N
63 C4 H4B C H sing 1.09 N N
64 O9 H9 O H sing 0.97 N N
65 C11 H11 C H sing 1.09 N N
66 C12 H12 C H sing 1.09 N N
67 O14 H1 O H sing 0.97 N N
68 C25 H16 C H sing 1.09 N N
69 C1' H1' C H sing 1.09 N N
70 C2' H2' C H sing 1.09 N N
71 C2' H2 C H sing 1.09 N N
72 O3' HO3 O H sing 0.97 N N
73 C3' H3' C H sing 1.09 N N
74 O4' H4' O H sing 0.97 N N
75 C5' H5' C H sing 1.09 N N
76 C6' H61' C H sing 1.09 N N
77 C6' H62' C H sing 1.09 N N
78 C6' H63' C H sing 1.09 N N
79 C18 H61A C H sing 1.09 N N
80 C18 H63A C H sing 1.09 N N
81 C18 H62A C H sing 1.09 N N
82 C24 H111 C H sing 1.09 N N
83 C24 H112 C H sing 1.09 N N
84 C24 H113 C H sing 1.09 N N
85 C27 H62B C H sing 1.09 N N
86 C27 H63B C H sing 1.09 N N
87 C27 H61B C H sing 1.09 N N
88 C28 H63C C H sing 1.09 N N
89 C28 H61C C H sing 1.09 N N
90 C28 H62C C H sing 1.09 N N
91 C17 H171 C H sing 1.09 N N
92 C17 H172 C H sing 1.09 N N
93 C17 H3 C H sing 1.09 N N