Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 18M    

Bonds between two atoms of the molecule

Total Number of Bonds: 48


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OP2 P O P doub 1.4802773 N N
2 O5' P O P sing 1.6093007 N N
3 P OP3 P O sing 1.6100128 N N
4 P OP1 P O sing 1.6108491 N N
5 O5' C5' O C sing 1.4295429 N N
6 C4' C5' C C sing 1.5298761 N N
7 C5' H5' C H sing 1.0889375 N N
8 C5' H5'A C H sing 1.0905054 N N
9 C3' C4' C C sing 1.5501884 N N
10 O4' C4' O C sing 1.4436208 N N
11 C4' H4' C H sing 1.0903513 N N
12 C1' O4' C O sing 1.4369478 N N
13 C2' C3' C C sing 1.548168 N N
14 C3' O3' C O sing 1.4288653 N N
15 C3' H3' C H sing 1.0894296 N N
16 O3' P1 O P sing 1.6102301 N N
17 O2' C2' O C sing 1.4286144 N N
18 C2' C1' C C sing 1.5451375 N N
19 C2' H2' C H sing 1.0901068 N N
20 O2' CM2 O C sing 1.4288377 N N
21 N9 C1' N C sing 1.46523 N N
22 C1' H1' C H sing 1.0898963 N N
23 C8 N9 C N sing 1.3643881 N Y
24 C4 N9 C N sing 1.3611969 N Y
25 N7 C8 N C doub 1.3025137 N Y
26 C8 H8 C H sing 1.0799991 N N
27 N7 C5 N C sing 1.3532827 N Y
28 C6 C5 C C sing 1.4663445 N N
29 C5 C4 C C doub 1.3889701 N Y
30 O6 C6 O C doub 1.2205081 N N
31 C6 N1 C N sing 1.3423673 N N
32 N1 C2 N C doub 1.3157724 N N
33 C2 N3 C N sing 1.3586615 N N
34 C2 N2 C N sing 1.3681188 N N
35 N2 HN2 N H sing 0.9698005 N N
36 N2 HN2A N H sing 0.9706853 N N
37 C4 N3 C N sing 1.3709581 N N
38 N3 HN3 N H sing 0.9699392 N N
39 O12 P1 O P doub 1.4802587 N N
40 P1 O13 P O sing 1.6102583 N N
41 P1 O11 P O sing 1.6094601 N N
42 O11 HO11 O H sing 0.96660334 N N
43 O13 HO13 O H sing 0.9676306 N N
44 CM2 HM2 C H sing 1.0893011 N N
45 CM2 HM2A C H sing 1.0902481 N N
46 CM2 HM2B C H sing 1.0907589 N N
47 OP1 HOP1 O H sing 0.96643984 N N
48 OP3 HOP3 O H sing 0.9662991 N N