Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 15U    

Bonds between two atoms of the molecule

Total Number of Bonds: 73


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C10 C2 C C sing 1.53 N N
2 C2 C3 C C sing 1.53 N N
3 C2 C1 C C sing 1.53 N N
4 C3 C4 C C sing 1.51 N N
5 C1 N C N sing 1.47 N N
6 C4 C5 C C doub 1.39 N Y
7 C4 C9 C C sing 1.38 N Y
8 C41 C51 C C sing 1.53 N N
9 C41 C31 C C sing 1.53 N N
10 C5 C6 C C sing 1.38 N Y
11 C71 C31 C C sing 1.53 N N
12 C51 N2 C N sing 1.47 N N
13 N C9 N C sing 1.39 N N
14 C9 C8 C C doub 1.4 N Y
15 C31 C21 C C sing 1.53 N N
16 O C O C doub 1.21 N N
17 C6 C7 C C doub 1.38 N Y
18 N2 C N C sing 1.35 N N
19 N2 C11 N C sing 1.47 N N
20 C CA C C sing 1.51 N N
21 C8 C7 C C sing 1.38 N Y
22 C8 S C S sing 1.76 N N
23 C21 C11 C C sing 1.53 N N
24 C11 C61 C C sing 1.51 N N
25 NH2 CZ N C doub 1.3 N N
26 O11 C61 O C doub 1.21 N N
27 N1 CA N C sing 1.46 N N
28 N1 S N S sing 1.66 N N
29 C61 O21 C O sing 1.34 N N
30 CA CB C C sing 1.53 N N
31 S O1 S O doub 1.42 N N
32 S O2 S O doub 1.42 N N
33 CG CB C C sing 1.53 N N
34 CG CD C C sing 1.53 N N
35 CZ NH1 C N sing 1.38 N N
36 CZ NE C N sing 1.37 N N
37 CD NE C N sing 1.46 N N
38 C1 H1 C H sing 1.09 N N
39 C1 H2 C H sing 1.09 N N
40 C2 H3 C H sing 1.09 N N
41 C3 H4 C H sing 1.09 N N
42 C3 H5 C H sing 1.09 N N
43 C5 H6 C H sing 1.08 N N
44 C6 H7 C H sing 1.08 N N
45 C7 H8 C H sing 1.08 N N
46 C10 H9 C H sing 1.09 N N
47 C10 H10 C H sing 1.09 N N
48 C10 H11 C H sing 1.09 N N
49 N H12 N H sing 1.01 N N
50 N1 H13 N H sing 0.97 N N
51 CA H14 C H sing 1.09 N N
52 CB H15 C H sing 1.09 N N
53 CB H16 C H sing 1.09 N N
54 CG H17 C H sing 1.09 N N
55 CG H18 C H sing 1.09 N N
56 CD H19 C H sing 1.09 N N
57 CD H20 C H sing 1.09 N N
58 NE H21 N H sing 0.97 N N
59 NH1 H22 N H sing 0.97 N N
60 NH1 H23 N H sing 0.97 N N
61 NH2 H24 N H sing 0.97 N N
62 C11 H26 C H sing 1.09 N N
63 C21 H27 C H sing 1.09 N N
64 C21 H28 C H sing 1.09 N N
65 C31 H29 C H sing 1.09 N N
66 C41 H30 C H sing 1.09 N N
67 C41 H31 C H sing 1.09 N N
68 C51 H32 C H sing 1.09 N N
69 C51 H33 C H sing 1.09 N N
70 O21 H34 O H sing 0.97 N N
71 C71 H35 C H sing 1.09 N N
72 C71 H36 C H sing 1.09 N N
73 C71 H37 C H sing 1.09 N N