Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 13V    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C20 O3 C O sing 1.4280952 N N
2 O3 C19 O C sing 1.4294422 N N
3 C19 C18 C C sing 1.5294502 N N
4 C18 O2 C O sing 1.4292582 N N
5 N1 C10 N C sing 1.3626573 N Y
6 N1 C9 N C sing 1.3783752 N Y
7 C10 C11 C C doub 1.3577633 N Y
8 C8 C9 C C doub 1.3926514 N Y
9 C8 C7 C C sing 1.3653476 N Y
10 C9 C12 C C sing 1.406608 N Y
11 O2 C17 O C sing 1.3598915 N N
12 C11 C12 C C sing 1.4726079 N Y
13 C11 C14 C C sing 1.4791301 N N
14 C7 C6 C C doub 1.3997064 N Y
15 C17 C14 C C doub 1.4035661 N Y
16 C17 C16 C C sing 1.3863932 N Y
17 C12 C13 C C doub 1.3916138 N Y
18 C14 N2 C N sing 1.3325138 N Y
19 C16 N4 C N doub 1.3258665 N Y
20 C6 C13 C C sing 1.3904679 N Y
21 C6 C5 C C sing 1.4324193 N N
22 N2 C15 N C doub 1.3230321 N Y
23 N4 C15 N C sing 1.3243583 N Y
24 C5 C4 C C trip 1.1735715 N N
25 C15 N3 C N sing 1.3859098 N N
26 O1 C1 O C sing 1.4290206 N N
27 C2 C1 C C sing 1.5297562 N N
28 C4 C1 C C sing 1.4719232 N N
29 C1 C3 C C sing 1.5303503 N N
30 N3 H1 N H sing 0.97034067 N N
31 N3 H2 N H sing 0.9699454 N N
32 C16 H3 C H sing 1.0792261 N N
33 C18 H4 C H sing 1.0895385 N N
34 C18 H5 C H sing 1.0896486 N N
35 C19 H6 C H sing 1.0890114 N N
36 C19 H7 C H sing 1.0905086 N N
37 C20 H8 C H sing 1.0905108 N N
38 C20 H9 C H sing 1.089722 N N
39 C20 H10 C H sing 1.0902449 N N
40 C10 H11 C H sing 1.0795823 N N
41 N1 H12 N H sing 0.97017264 N N
42 C8 H13 C H sing 1.0798305 N N
43 C7 H14 C H sing 1.080325 N N
44 C13 H15 C H sing 1.0794003 N N
45 C3 H16 C H sing 1.0903472 N N
46 C3 H17 C H sing 1.0892512 N N
47 C3 H18 C H sing 1.0897449 N N
48 C2 H19 C H sing 1.0895861 N N
49 C2 H20 C H sing 1.0905659 N N
50 C2 H21 C H sing 1.0903472 N N
51 O1 H22 O H sing 0.9662287 N N