Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 13J    

Bonds between two atoms of the molecule

Total Number of Bonds: 75


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C26 C29 C C sing 1.5308752 N N
2 C29 C27 C C sing 1.5303457 N N
3 C29 C13 C C sing 1.506484 N N
4 C5 C13 C C doub 1.3833315 N Y
5 C5 C7 C C sing 1.3807383 N Y
6 C13 C4 C C sing 1.3823639 N Y
7 C7 C14 C C doub 1.3889759 N Y
8 C4 C6 C C doub 1.3804756 N Y
9 C14 C6 C C sing 1.3891757 N Y
10 C14 N36 C N sing 1.3981924 N N
11 N36 C18 N C sing 1.3481432 N N
12 C3 C1 C C doub 1.3803221 N Y
13 C3 C12 C C sing 1.3972938 N Y
14 C18 C12 C C sing 1.4781891 N N
15 C18 O37 C O doub 1.215685 N N
16 C1 C2 C C sing 1.3816581 N Y
17 C25 C28 C C sing 1.5297967 N N
18 C12 C8 C C doub 1.3934191 N Y
19 C28 C19 C C sing 1.5069685 N N
20 C2 C11 C C doub 1.3944479 N Y
21 C8 C11 C C sing 1.3923936 N Y
22 C11 C15 C C sing 1.4822598 N N
23 C19 O38 C O doub 1.2128158 N N
24 C19 N34 C N sing 1.3476688 N N
25 N32 C15 N C doub 1.3117721 N Y
26 N32 N33 N N sing 1.4000064 N Y
27 C15 C10 C C sing 1.4626825 N Y
28 C23 N34 C N sing 1.4711277 N N
29 C23 C24 C C sing 1.531814 N N
30 N34 C22 N C sing 1.4689827 N N
31 N33 C24 N C sing 1.4649246 N N
32 N33 C16 N C sing 1.3624632 N Y
33 C24 C21 C C sing 1.5301183 N N
34 C10 C16 C C doub 1.4072448 N Y
35 C10 C17 C C sing 1.4043312 N Y
36 N35 C17 N C sing 1.381168 N N
37 C16 N30 C N sing 1.3334028 N Y
38 C17 N31 C N doub 1.3296804 N Y
39 C22 C20 C C sing 1.531828 N N
40 C21 C20 C C sing 1.5303104 N N
41 N30 C9 N C doub 1.3145821 N Y
42 N31 C9 N C sing 1.3208743 N Y
43 C4 H1 C H sing 1.0800204 N N
44 C7 H2 C H sing 1.080598 N N
45 C6 H3 C H sing 1.0805892 N N
46 C9 H4 C H sing 1.0807155 N N
47 C20 H5 C H sing 1.0899973 N N
48 C20 H6 C H sing 1.09026 N N
49 C21 H7 C H sing 1.0890298 N N
50 C21 H8 C H sing 1.0906479 N N
51 C8 H9 C H sing 1.0799158 N N
52 C26 H10 C H sing 1.089867 N N
53 C26 H11 C H sing 1.0896467 N N
54 C26 H12 C H sing 1.0899715 N N
55 C1 H13 C H sing 1.0791451 N N
56 C2 H14 C H sing 1.0805604 N N
57 C3 H15 C H sing 1.0793984 N N
58 C5 H16 C H sing 1.0797305 N N
59 C22 H17 C H sing 1.0899372 N N
60 C22 H18 C H sing 1.0891745 N N
61 C23 H19 C H sing 1.0892792 N N
62 C23 H20 C H sing 1.0905389 N N
63 C24 H21 C H sing 1.0907676 N N
64 C25 H22 C H sing 1.0896899 N N
65 C25 H23 C H sing 1.0898087 N N
66 C25 H24 C H sing 1.0897495 N N
67 C27 H25 C H sing 1.0897862 N N
68 C27 H26 C H sing 1.0900941 N N
69 C27 H27 C H sing 1.0898931 N N
70 C28 H28 C H sing 1.0896829 N N
71 C28 H29 C H sing 1.0906265 N N
72 C29 H30 C H sing 1.0899715 N N
73 N35 H31 N H sing 0.9702809 N N
74 N35 H32 N H sing 0.9699433 N N
75 N36 H33 N H sing 0.96984845 N N