Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0ZD    

Bonds between two atoms of the molecule

Total Number of Bonds: 116


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C53 C52 C C doub 1.3826399 N Y
2 C53 C54 C C sing 1.3830506 N Y
3 C52 C51 C C sing 1.3802996 N Y
4 C54 C55 C C doub 1.380694 N Y
5 C51 C50 C C doub 1.3941679 N Y
6 C55 C50 C C sing 1.393374 N Y
7 C50 C48 C C sing 1.4838861 N N
8 O61 C60 O C doub 1.2082884 N N
9 C49 C48 C C doub 1.393374 N Y
10 C49 C5A C C sing 1.3802699 N Y
11 C48 C47 C C sing 1.3935882 N Y
12 C60 O62 C O sing 1.341911 N N
13 C60 C56 C C sing 1.5068872 N N
14 C5A C45 C C doub 1.3832375 N Y
15 C47 C46 C C doub 1.3800815 N Y
16 C56 C57 C C sing 1.5298202 N N
17 C56 N40 C N sing 1.4650669 N N
18 C45 C46 C C sing 1.3837987 N Y
19 C45 S41 C S sing 1.7617245 N N
20 C57 C58 C C sing 1.5298108 N N
21 C57 C59 C C sing 1.5294816 N N
22 O43 S41 O S doub 1.421902 N N
23 N40 S41 N S sing 1.6559423 N N
24 N40 C39 N C sing 1.4649553 N N
25 S41 O42 S O doub 1.4208751 N N
26 C39 C38 C C sing 1.5299605 N N
27 O36 C35 O C doub 1.2150646 N N
28 C38 N37 C N sing 1.464521 N N
29 C35 N37 C N sing 1.349027 N N
30 C35 C33 C C sing 1.4785175 N N
31 C32 C33 C C doub 1.3964043 N Y
32 C32 C31 C C sing 1.3802137 N Y
33 C33 C34 C C sing 1.3924514 N Y
34 C31 C30 C C doub 1.3811321 N Y
35 C34 C29 C C doub 1.3931162 N Y
36 C30 C29 C C sing 1.396675 N Y
37 C29 C27 C C sing 1.4786859 N N
38 N26 C27 N C sing 1.3480909 N N
39 N26 C25 N C sing 1.4649385 N N
40 C27 O28 C O doub 1.2156389 N N
41 C25 C24 C C sing 1.5300487 N N
42 O15 S13 O S doub 1.4207705 N N
43 C24 N16 C N sing 1.4648498 N N
44 C20 C18 C C sing 1.5307286 N N
45 N16 S13 N S sing 1.6567668 N N
46 N16 C17 N C sing 1.4647177 N N
47 S13 O14 S O doub 1.4213381 N N
48 S13 C10 S C sing 1.7613679 N N
49 C19 C18 C C sing 1.5292357 N N
50 C18 C17 C C sing 1.5312041 N N
51 C11 C10 C C doub 1.383853 N Y
52 C11 C12 C C sing 1.3803083 N Y
53 C17 C21 C C sing 1.5062251 N N
54 C10 C9 C C sing 1.3828005 N Y
55 C12 C7 C C doub 1.3930161 N Y
56 O22 C21 O C doub 1.2082177 N N
57 C21 O23 C O sing 1.3428063 N N
58 C9 C8 C C doub 1.3801768 N Y
59 C7 C8 C C sing 1.3933051 N Y
60 C7 C1 C C sing 1.4843282 N N
61 C6 C1 C C doub 1.3931899 N Y
62 C6 C5 C C sing 1.3801768 N Y
63 C1 C2 C C sing 1.3939803 N Y
64 C5 C4 C C doub 1.3826644 N Y
65 C2 C3 C C doub 1.3802685 N Y
66 C4 C3 C C sing 1.3831366 N Y
67 O62 H1 O H sing 0.96784556 N N
68 C56 H2 C H sing 1.0889908 N N
69 C57 H3 C H sing 1.0907933 N N
70 C59 H4 C H sing 1.089085 N N
71 C59 H5 C H sing 1.0907837 N N
72 C59 H6 C H sing 1.0895122 N N
73 C58 H7 C H sing 1.090714 N N
74 C58 H8 C H sing 1.0893127 N N
75 C58 H9 C H sing 1.0900679 N N
76 C5A H10 C H sing 1.0796059 N N
77 C49 H11 C H sing 1.0790098 N N
78 C55 H12 C H sing 1.0792937 N N
79 C54 H13 C H sing 1.0802912 N N
80 C53 H14 C H sing 1.0800819 N N
81 C52 H15 C H sing 1.080049 N N
82 C51 H16 C H sing 1.0794823 N N
83 C47 H17 C H sing 1.0795518 N N
84 C46 H18 C H sing 1.0806304 N N
85 C39 H19 C H sing 1.0896921 N N
86 C39 H20 C H sing 1.0895737 N N
87 C38 H21 C H sing 1.0902724 N N
88 C38 H22 C H sing 1.0903215 N N
89 N37 H23 N H sing 0.96911246 N N
90 C32 H24 C H sing 1.0803976 N N
91 C31 H25 C H sing 1.0803689 N N
92 C30 H26 C H sing 1.0795786 N N
93 C34 H27 C H sing 1.0805063 N N
94 N26 H28 N H sing 0.969984 N N
95 C25 H29 C H sing 1.0902578 N N
96 C25 H30 C H sing 1.09005 N N
97 C24 H31 C H sing 1.0894365 N N
98 C24 H32 C H sing 1.0898849 N N
99 C17 H33 C H sing 1.0896348 N N
100 O23 H34 O H sing 0.9660088 N N
101 C18 H35 C H sing 1.0894847 N N
102 C20 H36 C H sing 1.0899711 N N
103 C20 H37 C H sing 1.089593 N N
104 C20 H38 C H sing 1.0903335 N N
105 C19 H39 C H sing 1.0894847 N N
106 C19 H40 C H sing 1.0901619 N N
107 C19 H41 C H sing 1.0909579 N N
108 C9 H42 C H sing 1.0799047 N N
109 C8 H43 C H sing 1.0803287 N N
110 C11 H44 C H sing 1.079516 N N
111 C12 H45 C H sing 1.0797133 N N
112 C6 H46 C H sing 1.0802226 N N
113 C5 H47 C H sing 1.0797893 N N
114 C4 H48 C H sing 1.0804082 N N
115 C3 H49 C H sing 1.0793647 N N
116 C2 H50 C H sing 1.0797133 N N