Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0Y3    

Bonds between two atoms of the molecule

Total Number of Bonds: 148


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C11 C10 C C doub 1.38 N Y
2 C11 C12 C C sing 1.38 N Y
3 C10 C9 C C sing 1.38 N Y
4 C12 C13 C C doub 1.38 N Y
5 C9 C8 C C doub 1.39 N Y
6 C13 C8 C C sing 1.39 N Y
7 C8 C5 C C sing 1.48 N N
8 O23 N22 O N sing 1.42 N N
9 C5 C6 C C doub 1.39 N Y
10 C5 C4 C C sing 1.39 N Y
11 C6 C7 C C sing 1.38 N Y
12 O52 C43 O C doub 1.22 N N
13 N22 C21 N C sing 1.35 N N
14 C4 C3 C C doub 1.38 N Y
15 C7 C2 C C doub 1.38 N Y
16 O36 C29 O C doub 1.21 N N
17 C31 C32 C C sing 1.53 N N
18 C31 C30 C C sing 1.53 N N
19 C43 C39 C C sing 1.48 N N
20 C43 N44 C N sing 1.35 N N
21 O25 C21 O C doub 1.21 N N
22 C21 C20 C C sing 1.51 N N
23 C45 N44 C N sing 1.47 N N
24 C45 C46 C C sing 1.53 N N
25 C32 N33 C N sing 1.46 N N
26 N33 C34 N C sing 1.35 N N
27 C38 C39 C C doub 1.39 N Y
28 C38 C37 C C sing 1.39 N Y
29 C39 C40 C C sing 1.4 N Y
30 C3 C2 C C sing 1.38 N Y
31 C29 C30 C C sing 1.51 N N
32 C29 N28 C N sing 1.35 N N
33 C2 S1 C S sing 1.76 N N
34 C34 C37 C C sing 1.48 N N
35 C34 O35 C O doub 1.22 N N
36 C37 C42 C C doub 1.4 N Y
37 C40 C41 C C doub 1.38 N Y
38 C20 N16 C N sing 1.47 N N
39 C20 C26 C C sing 1.53 N N
40 C27 N28 C N sing 1.46 N N
41 C27 C26 C C sing 1.53 N N
42 C47 C46 C C sing 1.53 N N
43 C47 C48 C C sing 1.51 N N
44 C42 C41 C C sing 1.38 N Y
45 S1 N16 S N sing 1.66 N N
46 S1 O14 S O doub 1.42 N N
47 S1 O15 S O doub 1.42 N N
48 N16 O17 N O sing 1.42 N N
49 O17 C19 O C sing 1.43 N N
50 C48 N49 C N sing 1.35 N N
51 C48 O53 C O doub 1.21 N N
52 N49 C50 N C sing 1.46 N N
53 C58 C57 C C sing 1.53 N N
54 C24 C19 C C sing 1.53 N N
55 C19 C23 C C sing 1.53 N N
56 C50 C51 C C sing 1.53 N N
57 C59 C57 C C sing 1.53 N N
58 C51 C54 C C sing 1.53 N N
59 C57 O56 C O sing 1.43 N N
60 O56 N55 O N sing 1.42 N N
61 N55 C54 N C sing 1.46 N N
62 N55 S60 N S sing 1.66 N N
63 C54 C75 C C sing 1.51 N N
64 O78 C75 O C doub 1.21 N N
65 C75 N76 C N sing 1.35 N N
66 O62 S60 O S doub 1.42 N N
67 S60 O61 S O doub 1.42 N N
68 S60 C63 S C sing 1.76 N N
69 N76 O77 N O sing 1.42 N N
70 C64 C63 C C doub 1.38 N Y
71 C64 C65 C C sing 1.38 N Y
72 C63 C68 C C sing 1.38 N Y
73 C65 C66 C C doub 1.39 N Y
74 C68 C67 C C doub 1.38 N Y
75 C66 C67 C C sing 1.39 N Y
76 C66 C69 C C sing 1.48 N N
77 C70 C69 C C doub 1.39 N Y
78 C70 C71 C C sing 1.38 N Y
79 C69 C74 C C sing 1.39 N Y
80 C71 C72 C C doub 1.38 N Y
81 C74 C73 C C doub 1.38 N Y
82 C72 C73 C C sing 1.38 N Y
83 C3 H1 C H sing 1.08 N N
84 C4 H2 C H sing 1.08 N N
85 C6 H3 C H sing 1.08 N N
86 C7 H4 C H sing 1.08 N N
87 C9 H5 C H sing 1.08 N N
88 C11 H6 C H sing 1.08 N N
89 C12 H7 C H sing 1.08 N N
90 C13 H8 C H sing 1.08 N N
91 N76 H9 N H sing 0.97 N N
92 O77 H10 O H sing 0.97 N N
93 C54 H11 C H sing 1.09 N N
94 C68 H12 C H sing 1.08 N N
95 C67 H13 C H sing 1.08 N N
96 C74 H14 C H sing 1.08 N N
97 C73 H15 C H sing 1.08 N N
98 C72 H16 C H sing 1.08 N N
99 C71 H17 C H sing 1.08 N N
100 C70 H18 C H sing 1.08 N N
101 C65 H19 C H sing 1.08 N N
102 C64 H20 C H sing 1.08 N N
103 C57 H21 C H sing 1.09 N N
104 C59 H22 C H sing 1.09 N N
105 C59 H23 C H sing 1.09 N N
106 C59 H24 C H sing 1.09 N N
107 C58 H25 C H sing 1.09 N N
108 C58 H26 C H sing 1.09 N N
109 C58 H27 C H sing 1.09 N N
110 C51 H28 C H sing 1.09 N N
111 C51 H29 C H sing 1.09 N N
112 C50 H30 C H sing 1.09 N N
113 C50 H31 C H sing 1.09 N N
114 N49 H32 N H sing 0.97 N N
115 C47 H33 C H sing 1.09 N N
116 C47 H34 C H sing 1.09 N N
117 C46 H35 C H sing 1.09 N N
118 C46 H36 C H sing 1.09 N N
119 C45 H37 C H sing 1.09 N N
120 C45 H38 C H sing 1.09 N N
121 N44 H39 N H sing 0.97 N N
122 C38 H40 C H sing 1.08 N N
123 C40 H41 C H sing 1.08 N N
124 C41 H42 C H sing 1.08 N N
125 C42 H43 C H sing 1.08 N N
126 N33 H44 N H sing 0.97 N N
127 C32 H45 C H sing 1.09 N N
128 C32 H46 C H sing 1.09 N N
129 C31 H47 C H sing 1.09 N N
130 C31 H48 C H sing 1.09 N N
131 C30 H49 C H sing 1.09 N N
132 C30 H50 C H sing 1.09 N N
133 N28 H51 N H sing 0.97 N N
134 C27 H52 C H sing 1.09 N N
135 C27 H53 C H sing 1.09 N N
136 C26 H54 C H sing 1.09 N N
137 C26 H55 C H sing 1.09 N N
138 C20 H56 C H sing 1.09 N N
139 N22 H57 N H sing 0.97 N N
140 O23 H58 O H sing 0.97 N N
141 C19 H59 C H sing 1.09 N N
142 C24 H60 C H sing 1.09 N N
143 C24 H61 C H sing 1.09 N N
144 C24 H62 C H sing 1.09 N N
145 C23 H63 C H sing 1.09 N N
146 C23 H64 C H sing 1.09 N N
147 C23 H65 C H sing 1.09 N N
148 C10 H66 C H sing 1.08 N N