Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Chemical Bonds

 Molecule : 0V2    

Bonds between two atoms of the molecule

Total Number of Bonds: 81


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C1 N C sing 1.36 N N
2 C1 C2 C C sing 1.39 N Y
3 C2 C3 C C sing 1.51 N N
4 C2 C26 C C doub 1.39 N Y
5 C3 C4 C C sing 1.53 N N
6 C3 H2 C H sing 1.09 N N
7 C3 H3 C H sing 1.09 N N
8 C4 N2 C N sing 1.47 N N
9 C4 H4 C H sing 1.09 N N
10 C4 H5 C H sing 1.09 N N
11 N2 H6 N H sing 1.01 N N
12 C5 N2 C N sing 1.47 N N
13 C5 C6 C C sing 1.53 N N
14 C5 H8 C H sing 1.09 N N
15 C5 H9 C H sing 1.09 N N
16 C6 C7 C C sing 1.53 N N
17 C6 H10 C H sing 1.09 N N
18 C7 C8 C C sing 1.53 N N
19 C7 H11 C H sing 1.09 N N
20 C7 H12 C H sing 1.09 N N
21 C8 H13 C H sing 1.09 N N
22 C8 H14 C H sing 1.09 N N
23 C9 C8 C C sing 1.53 N N
24 C9 H15 C H sing 1.09 N N
25 C9 C10 C C sing 1.47 N N
26 C24 C9 C C sing 1.53 N N
27 C24 H17 C H sing 1.09 N N
28 C24 H18 C H sing 1.09 N N
29 C25 C6 C C sing 1.53 N N
30 C25 C24 C C sing 1.53 N N
31 C25 H19 C H sing 1.09 N N
32 C25 H20 C H sing 1.09 N N
33 C26 N5 C N sing 1.36 N Y
34 C27 C26 C C sing 1.41 N Y
35 C27 N3 C N sing 1.39 N Y
36 N3 C28 N C sing 1.37 N Y
37 N3 H21 N H sing 0.97 N N
38 C28 N4 C N sing 1.38 N N
39 N4 C29 N C sing 1.46 N N
40 N4 H22 N H sing 0.97 N N
41 C29 H23 C H sing 1.09 N N
42 C29 H24 C H sing 1.09 N N
43 C29 H25 C H sing 1.09 N N
44 N5 C28 N C doub 1.31 N Y
45 C30 C27 C C doub 1.38 N Y
46 C30 H27 C H sing 1.08 N N
47 C40 C1 C C doub 1.42 N Y
48 C40 C30 C C sing 1.39 N Y
49 C41 C40 C C sing 1.47 N N
50 O1 C41 O C doub 1.22 N N
51 N6 C42 N C sing 1.37 N N
52 N6 C41 N C sing 1.35 N N
53 C42 N1 C N doub 1.31 N N
54 N7 C42 N C sing 1.37 N N
55 N7 H28 N H sing 0.97 N N
56 N7 H29 N H sing 0.97 N N
57 C10 C11 C C trip 1.17 N N
58 C11 C12 C C sing 1.43 N N
59 C12 C13 C C sing 1.4 N Y
60 C13 C14 C C doub 1.38 N Y
61 C13 H7 C H sing 1.08 N N
62 C14 C15 C C sing 1.4 N Y
63 C14 H16 C H sing 1.08 N N
64 C15 C16 C C doub 1.39 N Y
65 C15 C18 C C sing 1.48 N N
66 C16 C17 C C sing 1.38 N Y
67 C16 H30 C H sing 1.08 N N
68 C17 C12 C C doub 1.4 N Y
69 C17 H31 C H sing 1.08 N N
70 C18 C19 C C sing 1.39 N Y
71 C19 C20 C C doub 1.38 N Y
72 C19 H26 C H sing 1.08 N N
73 C20 C21 C C sing 1.38 N Y
74 C20 H32 C H sing 1.08 N N
75 C21 C22 C C doub 1.38 N Y
76 C21 H33 C H sing 1.08 N N
77 C22 C23 C C sing 1.38 N Y
78 C22 H34 C H sing 1.08 N N
79 C23 C18 C C doub 1.39 N Y
80 C23 H35 C H sing 1.08 N N
81 N6 H351 N H sing 0.97 N N