Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0V2    

Bonds between two atoms of the molecule

Total Number of Bonds: 81


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C1 N C sing 1.3579816 N N
2 C1 C2 C C sing 1.3900841 N Y
3 C2 C3 C C sing 1.5063765 N N
4 C2 C26 C C doub 1.3945612 N Y
5 C3 C4 C C sing 1.5291821 N N
6 C3 H2 C H sing 1.0904775 N N
7 C3 H3 C H sing 1.0900252 N N
8 C4 N2 C N sing 1.4696486 N N
9 C4 H4 C H sing 1.0903 N N
10 C4 H5 C H sing 1.0900252 N N
11 N2 H6 N H sing 1.0090322 N N
12 C5 N2 C N sing 1.4685305 N N
13 C5 C6 C C sing 1.5300056 N N
14 C5 H8 C H sing 1.0903981 N N
15 C5 H9 C H sing 1.0899591 N N
16 C6 C7 C C sing 1.5299478 N N
17 C6 H10 C H sing 1.090742 N N
18 C7 C8 C C sing 1.5302839 N N
19 C7 H11 C H sing 1.0898395 N N
20 C7 H12 C H sing 1.0903916 N N
21 C8 H13 C H sing 1.0898886 N N
22 C8 H14 C H sing 1.0898395 N N
23 C9 C8 C C sing 1.5293413 N N
24 C9 H15 C H sing 1.090742 N N
25 C9 C10 C C sing 1.4716865 N N
26 C24 C9 C C sing 1.5299478 N N
27 C24 H17 C H sing 1.0908056 N N
28 C24 H18 C H sing 1.0898395 N N
29 C25 C6 C C sing 1.5297556 N N
30 C25 C24 C C sing 1.5300641 N N
31 C25 H19 C H sing 1.0897211 N N
32 C25 H20 C H sing 1.0898395 N N
33 C26 N5 C N sing 1.3576177 N Y
34 C27 C26 C C sing 1.411717 N Y
35 C27 N3 C N sing 1.3890158 N Y
36 N3 C28 N C sing 1.365233 N Y
37 N3 H21 N H sing 0.96934927 N N
38 C28 N4 C N sing 1.3768933 N N
39 N4 C29 N C sing 1.4642712 N N
40 N4 H22 N H sing 0.96920276 N N
41 C29 H23 C H sing 1.0904706 N N
42 C29 H24 C H sing 1.0900766 N N
43 C29 H25 C H sing 1.0902486 N N
44 N5 C28 N C doub 1.3104331 N Y
45 C30 C27 C C doub 1.379377 N Y
46 C30 H27 C H sing 1.0793281 N N
47 C40 C1 C C doub 1.4179993 N Y
48 C40 C30 C C sing 1.3942894 N Y
49 C41 C40 C C sing 1.4671131 N N
50 O1 C41 O C doub 1.2179774 N N
51 N6 C42 N C sing 1.365241 N N
52 N6 C41 N C sing 1.3532528 N N
53 C42 N1 C N doub 1.3083566 N N
54 N7 C42 N C sing 1.3732101 N N
55 N7 H28 N H sing 0.9697794 N N
56 N7 H29 N H sing 0.9697825 N N
57 C10 C11 C C trip 1.1740063 N N
58 C11 C12 C C sing 1.4316134 N N
59 C12 C13 C C sing 1.3964226 N Y
60 C13 C14 C C doub 1.3771895 N Y
61 C13 H7 C H sing 1.0802857 N N
62 C14 C15 C C sing 1.3951448 N Y
63 C14 H16 C H sing 1.079247 N N
64 C15 C16 C C doub 1.3947147 N Y
65 C15 C18 C C sing 1.4828962 N N
66 C16 C17 C C sing 1.3766358 N Y
67 C16 H30 C H sing 1.0801874 N N
68 C17 C12 C C doub 1.3967351 N Y
69 C17 H31 C H sing 1.0808024 N N
70 C18 C19 C C sing 1.3937607 N Y
71 C19 C20 C C doub 1.3795148 N Y
72 C19 H26 C H sing 1.080615 N N
73 C20 C21 C C sing 1.3838642 N Y
74 C20 H32 C H sing 1.0800472 N N
75 C21 C22 C C doub 1.3831421 N Y
76 C21 H33 C H sing 1.0804832 N N
77 C22 C23 C C sing 1.3800213 N Y
78 C22 H34 C H sing 1.0798694 N N
79 C23 C18 C C doub 1.3941976 N Y
80 C23 H35 C H sing 1.0796022 N N
81 N6 H351 N H sing 0.9700026 N N