Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0RQ    

Bonds between two atoms of the molecule

Total Number of Bonds: 93


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1P C C C sing 1.5072973 N N
2 C1P C2P C C sing 1.5294685 N N
3 CH3 C C C sing 1.5075738 N N
4 C O C O doub 1.2069279 N N
5 C2P C3P C C sing 1.5299294 N N
6 C3P N4P C N sing 1.4646358 N N
7 N4P C5P N C sing 1.3483657 N N
8 C5P O5P C O doub 1.2126504 N N
9 C5P C6P C C sing 1.5070853 N N
10 C6P C7P C C sing 1.5302212 N N
11 C7P N8P C N sing 1.4646358 N N
12 N8P C9P N C sing 1.3482244 N N
13 OAP CAP O C sing 1.4290543 N N
14 O4A P2A O P doub 1.4799114 N N
15 C9P O9P C O doub 1.2125885 N N
16 C9P CAP C C sing 1.5070425 N N
17 O5A P2A O P sing 1.6100277 N N
18 CAP CBP C C sing 1.5296055 N N
19 P2A O6A P O sing 1.6101 N N
20 P2A O3A P O sing 1.6099273 N N
21 O6A CCP O C sing 1.4290406 N N
22 CBP CCP C C sing 1.5290631 N N
23 CBP CDP C C sing 1.5302892 N N
24 CBP CEP C C sing 1.5305583 N N
25 O3A P1A O P sing 1.60994 N N
26 O2A P1A O P doub 1.4800804 N N
27 P1A O5B P O sing 1.609654 N N
28 P1A O1A P O sing 1.6102401 N N
29 C5B O5B C O sing 1.4285153 N N
30 C5B C4B C C sing 1.5306162 N N
31 O7A P3B O P doub 1.4804652 N N
32 C4B O4B C O sing 1.4378182 N N
33 C4B C3B C C sing 1.5414454 N N
34 O4B C1B O C sing 1.4435661 N N
35 C3B O3B C O sing 1.4291662 N N
36 C3B C2B C C sing 1.5475264 N N
37 P3B O3B P O sing 1.6103729 N N
38 P3B O9A P O sing 1.6100351 N N
39 P3B O8A P O sing 1.6092787 N N
40 C2B C1B C C sing 1.5491501 N N
41 C2B O2B C O sing 1.4296731 N N
42 C1B N9A C N sing 1.4650607 N N
43 C8A N9A C N sing 1.3632678 N Y
44 C8A N7A C N doub 1.3007456 N Y
45 N9A C4A N C sing 1.3717583 N Y
46 N7A C5M N C sing 1.354305 N Y
47 C4A C5M C C doub 1.4053423 N Y
48 C4A N3A C N sing 1.3298789 N Y
49 C5M C6A C C sing 1.4052565 N Y
50 N3A C2A N C doub 1.3161805 N Y
51 C6A N6A C N sing 1.3834637 N N
52 C6A N1A C N doub 1.3286756 N Y
53 C2A N1A C N sing 1.320186 N Y
54 O8A H1 O H sing 0.96619564 N N
55 O9A H2 O H sing 0.9672115 N N
56 O1A H3 O H sing 0.96718615 N N
57 O5A H4 O H sing 0.967259 N N
58 CDP H5 C H sing 1.0905068 N N
59 CDP H6 C H sing 1.0898921 N N
60 CDP H7 C H sing 1.0906782 N N
61 CEP H8 C H sing 1.0893613 N N
62 CEP H9 C H sing 1.0900738 N N
63 CEP H10 C H sing 1.0894787 N N
64 CCP H11 C H sing 1.0900555 N N
65 CCP H12 C H sing 1.0903518 N N
66 CAP H13 C H sing 1.0903554 N N
67 C1B H14 C H sing 1.090039 N N
68 C2B H15 C H sing 1.0901908 N N
69 C3B H16 C H sing 1.0897156 N N
70 C5B H17 C H sing 1.0895454 N N
71 C5B H18 C H sing 1.0902702 N N
72 C2P H19 C H sing 1.0899844 N N
73 C2P H20 C H sing 1.0902982 N N
74 C3P H21 C H sing 1.0902982 N N
75 C7P H22 C H sing 1.0893948 N N
76 C7P H23 C H sing 1.08994 N N
77 C6P H24 C H sing 1.08994 N N
78 C6P H25 C H sing 1.0893948 N N
79 C4B H26 C H sing 1.089443 N N
80 OAP H27 O H sing 0.9663612 N N
81 N8P H28 N H sing 0.97012883 N N
82 O2B H29 O H sing 0.96657073 N N
83 C2A H30 C H sing 1.0803804 N N
84 C8A H31 C H sing 1.080373 N N
85 N6A H32 N H sing 0.9703309 N N
86 N6A H33 N H sing 0.9701825 N N
87 C1P H34 C H sing 1.0899844 N N
88 C1P H35 C H sing 1.0902982 N N
89 CH3 H36 C H sing 1.090481 N N
90 CH3 H37 C H sing 1.0898665 N N
91 CH3 H38 C H sing 1.0898867 N N
92 C3P H39 C H sing 1.0905416 N N
93 N4P H40 N H sing 0.96903455 N N