Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0R8    

Bonds between two atoms of the molecule

Total Number of Bonds: 49


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OP2 P O P sing 1.61 N N
2 C5' C4' C C sing 1.53 N N
3 C5' O5' C O sing 1.43 N N
4 C4' C3' C C sing 1.55 N N
5 C4' O4' C O sing 1.44 N N
6 C3' C2' C C sing 1.56 N N
7 C2' C1' C C sing 1.54 N N
8 O5' P O P sing 1.61 N N
9 P OP1 P O doub 1.48 N N
10 O4' C1' O C sing 1.43 N N
11 C1' N1 C N sing 1.46 N N
12 N1 C6 N C sing 1.36 N N
13 N1 C2 N C sing 1.34 N N
14 O2 C2 O C doub 1.22 N N
15 C6 C5 C C doub 1.38 N N
16 C2 N3 C N sing 1.33 N N
17 C5 C1 C C sing 1.43 N N
18 C5 C4 C C sing 1.47 N N
19 N3 C4 N C doub 1.33 N N
20 C1 C3 C C trip 1.17 N N
21 C4 N4 C N sing 1.37 N N
22 C3 C01 C C sing 1.43 N N
23 C02 C01 C C doub 1.4 N Y
24 C02 C03 C C sing 1.37 N Y
25 C01 C C C sing 1.4 N Y
26 C03 C04 C C doub 1.4 N Y
27 C C05 C C doub 1.37 N Y
28 C04 C05 C C sing 1.4 N Y
29 C04 C7 C C sing 1.43 N N
30 C7 C8 C C trip 1.17 N N
31 OP2 HOP2 O H sing 0.97 N N
32 C1' H1' C H sing 1.09 N N
33 C6 H6 C H sing 1.08 N N
34 N4 H41 N H sing 0.97 N N
35 N4 H42 N H sing 0.97 N N
36 C4' H7 C H sing 1.09 N N
37 C3' H3' C H sing 1.09 N N
38 C3' H3'' C H sing 1.09 N N
39 C2' H2' C H sing 1.09 N N
40 C2' H2'' C H sing 1.09 N N
41 C5' H5' C H sing 1.09 N N
42 C5' H5'' C H sing 1.09 N N
43 C02 H14 C H sing 1.08 N N
44 C03 H15 C H sing 1.08 N N
45 C05 H16 C H sing 1.08 N N
46 C H17 C H sing 1.08 N N
47 C8 H18 C H sing 1.05 N N
48 P OP3 P O sing 1.61 N N
49 OP3 HOP3 O H sing 0.97 N N