Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0QS    

Bonds between two atoms of the molecule

Total Number of Bonds: 113


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 S O1S S O doub 1.42 N N
2 S O2S S O doub 1.42 N N
3 S C S C sing 1.81 N N
4 C C1 C C sing 1.53 N N
5 C C2 C C sing 1.53 N N
6 C C3 C C sing 1.53 N N
7 C1 H11 C H sing 1.09 N N
8 C1 H12 C H sing 1.09 N N
9 C1 H13 C H sing 1.09 N N
10 C2 H21 C H sing 1.09 N N
11 C2 H22 C H sing 1.09 N N
12 C2 H23 C H sing 1.09 N N
13 C3 H31 C H sing 1.09 N N
14 C3 H32 C H sing 1.09 N N
15 C3 H33 C H sing 1.09 N N
16 N3 HM2 N H sing 0.97 N N
17 CA CB C C sing 1.53 N N
18 CA C4 C C sing 1.51 N N
19 CA HA C H sing 1.09 N N
20 CB CG C C sing 1.51 N N
21 CB HB1 C H sing 1.09 N N
22 CB HB2 C H sing 1.09 N N
23 CG CD1 C C doub 1.38 N Y
24 CG CD2 C C sing 1.38 N Y
25 CD1 CE1 C C sing 1.38 N Y
26 CD1 HD1 C H sing 1.08 N N
27 CD2 CE2 C C doub 1.38 N Y
28 CD2 HD2 C H sing 1.08 N N
29 CE1 CZ C C doub 1.38 N Y
30 CE1 HE1 C H sing 1.08 N N
31 CE2 CZ C C sing 1.38 N Y
32 CE2 HE2 C H sing 1.08 N N
33 CZ HZ C H sing 1.08 N N
34 C4 O C O doub 1.21 N N
35 N CA1 N C sing 1.47 N N
36 N H N H sing 0.97 N N
37 CA1 C5 C C sing 1.51 N N
38 CA1 CB1 C C sing 1.53 N N
39 CA1 HA1 C H sing 1.09 N N
40 C5 O1 C O doub 1.21 N N
41 CB1 CG1 C C sing 1.51 N N
42 CB1 HB21 C H sing 1.09 N N
43 CB1 HB3 C H sing 1.09 N N
44 CG1 ND1 C N sing 1.34 N Y
45 CG1 CD21 C C doub 1.35 N Y
46 ND1 CE11 N C doub 1.31 N Y
47 ND1 HD11 N H sing 0.97 N N
48 CD21 NE2 C N sing 1.37 N Y
49 CD21 HD21 C H sing 1.08 N N
50 CE11 NE2 C N sing 1.35 N Y
51 CE11 HE11 C H sing 1.08 N N
52 NE2 HE21 N H sing 0.97 N N
53 N1 CA2 N C sing 1.47 N N
54 N1 H1 N H sing 0.97 N N
55 CA2 CB2 C C sing 1.53 N N
56 CA2 CH C C sing 1.53 N N
57 CA2 HA2 C H sing 1.09 N N
58 CB2 CG2 C C sing 1.53 N N
59 CB2 HB22 C H sing 1.09 N N
60 CB2 HB31 C H sing 1.09 N N
61 CG2 CD11 C C sing 1.53 N N
62 CG2 CD22 C C sing 1.53 N N
63 CG2 HG C H sing 1.09 N N
64 CD11 CE12 C C sing 1.53 N N
65 CD11 HD12 C H sing 1.09 N N
66 CD11 HD13 C H sing 1.09 N N
67 CD22 CE21 C C sing 1.53 N N
68 CD22 HD23 C H sing 1.09 N N
69 CD22 HD22 C H sing 1.09 N N
70 CE12 CZ1 C C sing 1.53 N N
71 CE12 HE12 C H sing 1.09 N N
72 CE12 HE13 C H sing 1.09 N N
73 CE21 CZ1 C C sing 1.53 N N
74 CE21 HE23 C H sing 1.09 N N
75 CE21 HE22 C H sing 1.09 N N
76 CZ1 HZ2 C H sing 1.09 N N
77 CZ1 HZ3 C H sing 1.09 N N
78 CH OH1 C O sing 1.43 N N
79 CH OH2 C O sing 1.43 N N
80 CH CM1 C C sing 1.53 N N
81 OH1 HH1 O H sing 0.97 N N
82 OH2 HH2 O H sing 0.97 N N
83 CM1 F1 C F sing 1.4 N N
84 CM1 F2 C F sing 1.4 N N
85 CM1 C6 C C sing 1.51 N N
86 C6 O2 C O doub 1.21 N N
87 O11 C21 O C sing 1.43 N N
88 O11 C61 O C sing 1.43 N N
89 C21 C31 C C sing 1.53 N N
90 C21 H211 C H sing 1.09 N N
91 C21 H221 C H sing 1.09 N N
92 C31 N4 C N sing 1.47 N N
93 C31 H311 C H sing 1.09 N N
94 C31 H321 C H sing 1.09 N N
95 N4 C51 N C sing 1.47 N N
96 N4 C1' N C sing 1.47 N N
97 C51 C61 C C sing 1.53 N N
98 C51 H51 C H sing 1.09 N N
99 C51 H52 C H sing 1.09 N N
100 C61 H61 C H sing 1.09 N N
101 C61 H62 C H sing 1.09 N N
102 C1' C2' C C sing 1.53 N N
103 C1' H1'1 C H sing 1.09 N N
104 C1' H1'2 C H sing 1.09 N N
105 C2' N2' C N sing 1.46 N N
106 C2' H2'1 C H sing 1.09 N N
107 C2' H2'2 C H sing 1.09 N N
108 N2' HN21 N H sing 0.97 N N
109 C4 N C N sing 1.35 N N
110 C5 N1 C N sing 1.35 N N
111 N3 S N S sing 1.66 N N
112 N3 CA N C sing 1.46 N N
113 C6 N2' C N sing 1.35 N N