Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Chemical Bonds

 Molecule : 0O6    

Bonds between two atoms of the molecule

Total Number of Bonds: 182


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O C O C doub 1.2128322 N N
2 CA C C C sing 1.506311 N N
3 C NCE C N sing 1.34779 N N
4 CAC N C N sing 1.4694818 N N
5 N CA N C sing 1.4690126 N N
6 N HN N H sing 1.0086753 N N
7 CB CA C C sing 1.530349 N N
8 CA HA C H sing 1.0897977 N N
9 CB CAA C C sing 1.5297732 N N
10 CB HB C H sing 1.0906539 N N
11 CB HBA C H sing 1.0902523 N N
12 CAA HAA C H sing 1.0901977 N N
13 CAA HAAA C H sing 1.0901945 N N
14 CAA HAAB C H sing 1.0904751 N N
15 CAB CBD C C sing 1.5299735 N N
16 CAB HAB C H sing 1.0898963 N N
17 CAB HABA C H sing 1.0898132 N N
18 CAB HABB C H sing 1.0904105 N N
19 CAC HAC C H sing 1.0900693 N N
20 CAC HACA C H sing 1.0899564 N N
21 CAC HACB C H sing 1.0903857 N N
22 CAD NCB C N sing 1.4691732 N N
23 CAD HAD C H sing 1.0892557 N N
24 CAD HADA C H sing 1.090338 N N
25 CAD HADB C H sing 1.0904536 N N
26 OAF CCH O C doub 1.2124492 N N
27 CCI OAG C O doub 1.2128404 N N
28 CCJ OAH C O doub 1.2124562 N N
29 CCK OAI C O doub 1.2171988 N N
30 CCL OAJ C O doub 1.2171332 N N
31 OAK CBI O C sing 1.4293009 N N
32 OAK HOAK O H sing 0.96736807 N N
33 CBJ OAL C O sing 1.4290336 N N
34 OAL HOAL O H sing 0.9676905 N N
35 CAO CAM C C doub 1.3818574 N Y
36 CAM CAP C C sing 1.3824738 N Y
37 CAM HAM C H sing 1.0798371 N N
38 CAQ CAN C C doub 1.3831836 N Y
39 CAN CAR C C sing 1.3826011 N Y
40 CAN HAN C H sing 1.0795494 N N
41 CAS CAO C C sing 1.3827512 N Y
42 CAO HAO C H sing 1.0802388 N N
43 CAT CAP C C doub 1.3822829 N Y
44 CAP HAP C H sing 1.0805277 N N
45 CAU CAQ C C sing 1.3817507 N Y
46 CAQ HAQ C H sing 1.079806 N N
47 CAV CAR C C doub 1.3822423 N Y
48 CAR HAR C H sing 1.0801065 N N
49 CAS CCO C C doub 1.3823357 N Y
50 CAS HAS C H sing 1.0791432 N N
51 CCO CAT C C sing 1.382472 N Y
52 CAT HAT C H sing 1.0806595 N N
53 CAU CCP C C doub 1.3824594 N Y
54 CAU HAU C H sing 1.0807706 N N
55 CCP CAV C C sing 1.3826655 N Y
56 CAV HAV C H sing 1.0792451 N N
57 CAX CAW C C doub 1.3823783 N Y
58 CAW CCM C C sing 1.3822594 N Y
59 CAW HAW C H sing 1.0800458 N N
60 CAX CCN C C sing 1.382021 N Y
61 CAX HAX C H sing 1.0794003 N N
62 CAZ CAY C C sing 1.3821411 N Y
63 CCM CAY C C doub 1.3821498 N Y
64 CAY HAY C H sing 1.0809116 N N
65 CCN CAZ C C doub 1.3822594 N Y
66 CAZ HAZ C H sing 1.080449 N N
67 CCQ CBA C C doub 1.3529944 N Y
68 NDG CBA N C sing 1.3534024 N Y
69 CBA HBAA C H sing 1.0796689 N N
70 NDH CBB N C sing 1.3538582 N Y
71 CBB CCR C C doub 1.3530344 N Y
72 CBB HBB C H sing 1.0800375 N N
73 CBD CCV C C sing 1.5306162 N N
74 CBD HBD C H sing 1.0893732 N N
75 CBD HBDA C H sing 1.0904082 N N
76 CBE CBK C C sing 1.5301274 N N
77 CBE CBG C C sing 1.5301144 N N
78 CBE HBE C H sing 1.089944 N N
79 CBE HBEA C H sing 1.0904577 N N
80 CBL CBF C C sing 1.5299474 N N
81 CBF CBH C C sing 1.5298504 N N
82 CBF HBF C H sing 1.0902321 N N
83 CBF HBFA C H sing 1.090333 N N
84 CBG CBU C C sing 1.5301285 N N
85 CBG HBG C H sing 1.0896407 N N
86 CBG HBGA C H sing 1.0900574 N N
87 CBV CBH C C sing 1.5299457 N N
88 CBH HBH C H sing 1.0897757 N N
89 CBH HBHA C H sing 1.0900877 N N
90 CCS CBI C C sing 1.5342995 N N
91 CBI HBI C H sing 1.0900912 N N
92 CBI HBIA C H sing 1.0893328 N N
93 CCT CBJ C C sing 1.5348166 N N
94 CBJ HBJ C H sing 1.0894132 N N
95 CBJ HBJA C H sing 1.0895288 N N
96 CCM CBK C C sing 1.5076421 N N
97 CBK HBK C H sing 1.0900574 N N
98 CBK HBKA C H sing 1.0890822 N N
99 CBL CCN C C sing 1.5073782 N N
100 CBL HBL C H sing 1.0900877 N N
101 CBL HBLA C H sing 1.0896302 N N
102 CCS CBM C C sing 1.528495 N N
103 CBM CBO C C sing 1.5254282 N N
104 CBM HBM C H sing 1.0894246 N N
105 CBM HBMA C H sing 1.097596 N N
106 CBP CBN C C sing 1.5252482 N N
107 CBN CCT C C sing 1.5281564 N N
108 CBN HBN C H sing 1.0900688 N N
109 CBN HBNA C H sing 1.0968801 N N
110 CCW CBO C C sing 1.5275618 N N
111 CBO HBO C H sing 1.0935323 N N
112 CBO HBOA C H sing 1.0880308 N N
113 CCX CBP C C sing 1.5284882 N N
114 CBP HBP C H sing 1.0933783 N N
115 CBP HBPA C H sing 1.0879605 N N
116 CCW CBQ C C sing 1.540038 N N
117 CBQ CBS C C sing 1.5447929 N N
118 CBQ HBQ C H sing 1.089833 N N
119 CBQ HBQA C H sing 1.0915887 N N
120 CBT CBR C C sing 1.5433894 N N
121 CBR CCX C C sing 1.5385555 N N
122 CBR HBR C H sing 1.0904361 N N
123 CBR HBRA C H sing 1.0911301 N N
124 CBS CCY C C sing 1.5376271 N N
125 CBS HBS C H sing 1.0901257 N N
126 CBS HBSA C H sing 1.0888718 N N
127 CBT CCZ C C sing 1.5402861 N N
128 CBT HBT C H sing 1.0877321 N N
129 CBT HBTA C H sing 1.0904646 N N
130 NDG CBU N C sing 1.4649233 N N
131 CBU HBU C H sing 1.0896407 N N
132 CBU HBUA C H sing 1.0907599 N N
133 CBV NDH C N sing 1.4646584 N N
134 CBV HBV C H sing 1.090333 N N
135 CBV HBVA C H sing 1.0902321 N N
136 NBW NBY N N doub 1.2854143 N Y
137 NBW CCQ N C sing 1.3379155 N Y
138 NBZ NBX N N doub 1.2865065 N Y
139 NBX CCR N C sing 1.3375328 N Y
140 NBY NDG N N sing 1.2875131 N Y
141 NBZ NDH N N sing 1.2871189 N Y
142 CCV NCB C N sing 1.4692954 N N
143 NCB HNCB N H sing 1.0087442 N N
144 CCI NCC C N sing 1.348046 N N
145 NCC CDA N C sing 1.4653498 N N
146 NCC HNCC N H sing 0.9695736 N N
147 NCD CCJ N C sing 1.3474988 N N
148 NCD CDB N C sing 1.4651297 N N
149 NCD HNCD N H sing 0.9699943 N N
150 NCE CDC N C sing 1.4623287 N N
151 NCE HNCE N H sing 0.9705287 N N
152 CDD NCF C N sing 1.4628998 N N
153 CCH NCF C N sing 1.3483701 N N
154 NCF HNCF N H sing 0.96938586 N N
155 CCH CCV C C sing 1.506396 N N
156 CCY CCI C C sing 1.5064597 N N
157 CCZ CCJ C C sing 1.5061584 N N
158 CDC CCK C C sing 1.5011256 N N
159 CCK NDE C N sing 1.3436528 N N
160 NDF CCL N C sing 1.3428388 N N
161 CCL CDD C C sing 1.5021255 N N
162 CDA CCO C C sing 1.5067186 N N
163 CDB CCP C C sing 1.5066243 N N
164 CDA CCQ C C sing 1.5066854 N N
165 CCR CDB C C sing 1.5075845 N N
166 CDC CCS C C sing 1.5246207 N N
167 CCS HCS C H sing 1.093606 N N
168 CDD CCT C C sing 1.5250022 N N
169 CCT HCT C H sing 1.092789 N N
170 CCV HCV C H sing 1.089039 N N
171 CCW NDE C N sing 1.4661467 N N
172 CCW HCW C H sing 1.0915681 N N
173 CCX NDF C N sing 1.4642394 N N
174 CCX HCX C H sing 1.0921214 N N
175 NDE CCY N C sing 1.4702888 N N
176 CCY HCY C H sing 1.0884511 N N
177 CCZ NDF C N sing 1.4732562 N N
178 CCZ HCZ C H sing 1.0884719 N N
179 CDA HDA C H sing 1.0901679 N N
180 CDB HDB C H sing 1.0894613 N N
181 CDC HDC C H sing 1.100886 N N
182 CDD HDD C H sing 1.1006943 N N