Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
0MY
Bonds between two atoms of the molecule
Total Number of Bonds: 45
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
O2
S1
O
S
doub
1.42
N
N
2
S1
O1
S
O
doub
1.42
N
N
3
S1
C14
S
C
sing
1.76
N
N
4
S1
N4
S
N
sing
1.66
N
N
5
C14
C17
C
C
doub
1.38
N
Y
6
C14
C15
C
C
sing
1.38
N
Y
7
C17
C18
C
C
sing
1.38
N
Y
8
C18
CL1
C
CL
sing
1.74
N
N
9
C18
C19
C
C
doub
1.38
N
Y
10
C19
C16
C
C
sing
1.38
N
Y
11
C16
C15
C
C
doub
1.38
N
Y
12
N4
C11
N
C
sing
1.4
N
N
13
C11
C10
C
C
doub
1.39
N
Y
14
C11
C12
C
C
sing
1.39
N
Y
15
C10
C9
C
C
sing
1.38
N
Y
16
C9
C8
C
C
doub
1.39
N
Y
17
C12
C13
C
C
doub
1.38
N
Y
18
C13
C8
C
C
sing
1.39
N
Y
19
C8
C1
C
C
sing
1.48
N
N
20
C1
C4
C
C
doub
1.39
N
Y
21
C1
C2
C
C
sing
1.4
N
Y
22
C4
C6
C
C
sing
1.4
N
Y
23
C6
C5
C
C
sing
1.46
N
Y
24
C6
C7
C
C
doub
1.41
N
Y
25
C5
N3
C
N
sing
1.4
N
N
26
C5
N2
C
N
doub
1.31
N
Y
27
N2
N1
N
N
sing
1.4
N
Y
28
C7
N1
C
N
sing
1.37
N
Y
29
C7
C3
C
C
sing
1.39
N
Y
30
C3
C2
C
C
doub
1.36
N
Y
31
C17
H17
C
H
sing
1.08
N
N
32
C19
H19
C
H
sing
1.08
N
N
33
C16
H16
C
H
sing
1.08
N
N
34
C15
H15
C
H
sing
1.08
N
N
35
N4
HN4
N
H
sing
0.97
N
N
36
C10
H10
C
H
sing
1.08
N
N
37
C9
H9
C
H
sing
1.08
N
N
38
C12
H12
C
H
sing
1.08
N
N
39
C13
H13
C
H
sing
1.08
N
N
40
C4
H4
C
H
sing
1.08
N
N
41
N3
HN3
N
H
sing
0.97
N
N
42
N3
HN3A
N
H
sing
0.97
N
N
43
N1
HN1
N
H
sing
0.97
N
N
44
C3
H3
C
H
sing
1.08
N
N
45
C2
H2
C
H
sing
1.08
N
N