Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0LD    

Bonds between two atoms of the molecule

Total Number of Bonds: 56


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O25 N9 O N sing 1.42 N N
2 O5 C2 O C doub 1.22 N N
3 N9 C2 N C sing 1.34 N N
4 N9 C22 N C sing 1.39 N N
5 C2 C3 C C sing 1.46 N N
6 C1 C15 C C sing 1.51 N N
7 N10 C22 N C doub 1.31 N Y
8 N10 N11 N N sing 1.4 N Y
9 C22 C20 C C sing 1.46 N Y
10 O26 C17 O C sing 1.36 N N
11 C3 N8 C N sing 1.4 N N
12 C3 C4 C C doub 1.36 N N
13 N8 C14 N C sing 1.47 N N
14 C33 C32 C C doub 1.38 N Y
15 C33 C28 C C sing 1.39 N Y
16 C15 C17 C C doub 1.39 N Y
17 C15 N12 C N sing 1.32 N Y
18 C17 C18 C C sing 1.39 N Y
19 N11 C28 N C sing 1.4 N N
20 N11 C16 N C sing 1.35 N Y
21 C20 C4 C C sing 1.46 N N
22 C20 C16 C C doub 1.38 N Y
23 C32 C31 C C sing 1.38 N Y
24 C28 C29 C C doub 1.39 N Y
25 N12 C21 N C doub 1.32 N Y
26 C18 C14 C C sing 1.51 N N
27 C18 C19 C C doub 1.39 N Y
28 C31 C30 C C doub 1.38 N Y
29 C29 C30 C C sing 1.38 N Y
30 C21 C19 C C sing 1.38 N Y
31 C19 C13 C C sing 1.51 N N
32 C13 O24 C O sing 1.43 N N
33 O24 P23 O P sing 1.61 N N
34 P23 O27 P O doub 1.48 N N
35 P23 O7 P O sing 1.61 N N
36 P23 O6 P O sing 1.61 N N
37 C33 H1 C H sing 1.08 N N
38 C32 H2 C H sing 1.08 N N
39 C4 H3 C H sing 1.08 N N
40 C13 H4 C H sing 1.09 N N
41 C13 H5 C H sing 1.09 N N
42 C21 H6 C H sing 1.08 N N
43 C16 H7 C H sing 1.08 N N
44 C31 H8 C H sing 1.08 N N
45 C30 H9 C H sing 1.08 N N
46 C29 H10 C H sing 1.08 N N
47 C1 H11 C H sing 1.09 N N
48 C1 H12 C H sing 1.09 N N
49 C1 H13 C H sing 1.09 N N
50 C14 H14 C H sing 1.09 N N
51 C14 H15 C H sing 1.09 N N
52 N8 H16 N H sing 0.97 N N
53 O6 H17 O H sing 0.97 N N
54 O7 H18 O H sing 0.97 N N
55 O26 H19 O H sing 0.97 N N
56 O25 H20 O H sing 0.97 N N