Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0K9    

Bonds between two atoms of the molecule

Total Number of Bonds: 90


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C30 C28 C C sing 1.5305506 N N
2 C29 C28 C C sing 1.5294725 N N
3 C28 C31 C C sing 1.5300895 N N
4 C28 C27 C C sing 1.5299013 N N
5 C22 N23 C N doub 1.3169097 N Y
6 C22 C21 C C sing 1.381481 N Y
7 C27 C21 C C sing 1.5071712 N N
8 N23 C16 N C sing 1.3291276 N Y
9 C21 C20 C C doub 1.3868101 N Y
10 C16 O17 C O sing 1.3589966 N N
11 C16 C15 C C doub 1.3844237 N Y
12 C20 C15 C C sing 1.3876866 N Y
13 O17 C18 O C sing 1.4230819 N N
14 C26 C25 C C sing 1.5389285 N N
15 C26 C18 C C sing 1.534467 N N
16 C15 C14 C C sing 1.506161 N N
17 C25 C24 C C sing 1.5392187 N N
18 C18 C24 C C sing 1.5332808 N N
19 C18 C19 C C sing 1.5296631 N N
20 C14 C19 C C sing 1.531593 N N
21 C14 N4 C N sing 1.4692831 N N
22 N4 C3 N C sing 1.468601 N N
23 O5 C2 O C sing 1.4293733 N N
24 O34 C33 O C doub 1.2134204 N N
25 C3 C2 C C sing 1.5297104 N N
26 C2 C1 C C sing 1.5299373 N N
27 C1 C7 C C sing 1.5303689 N N
28 C1 N6 C N sing 1.464559 N N
29 C33 N6 C N sing 1.3475511 N N
30 C33 C35 C C sing 1.5071741 N N
31 C13 C12 C C doub 1.3830651 N Y
32 C13 C8 C C sing 1.3846928 N Y
33 C7 C8 C C sing 1.506245 N N
34 C42 C35 C C sing 1.5298791 N N
35 C35 O36 C O sing 1.4288104 N N
36 C12 C11 C C sing 1.3799323 N Y
37 C8 C9 C C doub 1.3796409 N Y
38 O36 C37 O C sing 1.4294856 N N
39 C11 C10 C C doub 1.3950684 N Y
40 C9 C10 C C sing 1.3953878 N Y
41 C10 C32 C C sing 1.477978 N N
42 C32 N38 C N doub 1.3022658 N Y
43 C32 S41 C S sing 1.7619407 N Y
44 N38 C39 N C sing 1.3129696 N Y
45 S41 C40 S C sing 1.7622327 N Y
46 C39 C40 C C doub 1.3382698 N Y
47 C24 H1 C H sing 1.0901582 N N
48 C24 H2 C H sing 1.0895159 N N
49 C25 H3 C H sing 1.0900105 N N
50 C25 H4 C H sing 1.0896953 N N
51 C26 H5 C H sing 1.0893571 N N
52 C26 H6 C H sing 1.0899343 N N
53 C19 H7 C H sing 1.0904981 N N
54 C19 H8 C H sing 1.0896949 N N
55 C22 H9 C H sing 1.0792637 N N
56 C27 H10 C H sing 1.0898092 N N
57 C27 H11 C H sing 1.0893618 N N
58 C30 H12 C H sing 1.089911 N N
59 C30 H13 C H sing 1.0893939 N N
60 C30 H14 C H sing 1.0891964 N N
61 C31 H15 C H sing 1.0895067 N N
62 C31 H16 C H sing 1.089833 N N
63 C31 H17 C H sing 1.0904778 N N
64 C29 H18 C H sing 1.0903568 N N
65 C29 H19 C H sing 1.089442 N N
66 C29 H20 C H sing 1.0899569 N N
67 C20 H21 C H sing 1.0800375 N N
68 C14 H22 C H sing 1.0896142 N N
69 N4 H23 N H sing 1.0092309 N N
70 C3 H25 C H sing 1.090261 N N
71 C3 H26 C H sing 1.089944 N N
72 C2 H27 C H sing 1.0894021 N N
73 O5 H28 O H sing 0.9669747 N N
74 C1 H29 C H sing 1.0906512 N N
75 N6 H30 N H sing 0.9697675 N N
76 C35 H31 C H sing 1.0900587 N N
77 C42 H32 C H sing 1.0896064 N N
78 C42 H33 C H sing 1.0905856 N N
79 C42 H34 C H sing 1.0897675 N N
80 C37 H35 C H sing 1.0901344 N N
81 C37 H36 C H sing 1.0898591 N N
82 C37 H37 C H sing 1.0897747 N N
83 C7 H38 C H sing 1.0899624 N N
84 C7 H39 C H sing 1.0899807 N N
85 C9 H40 C H sing 1.0807965 N N
86 C13 H41 C H sing 1.079788 N N
87 C12 H42 C H sing 1.080169 N N
88 C11 H43 C H sing 1.0801444 N N
89 C39 H44 C H sing 1.0795838 N N
90 C40 H45 C H sing 1.0796064 N N