Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Chemical Bonds

 Molecule : 0K9    

Bonds between two atoms of the molecule

Total Number of Bonds: 90


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C30 C28 C C sing 1.53 N N
2 C29 C28 C C sing 1.53 N N
3 C28 C31 C C sing 1.53 N N
4 C28 C27 C C sing 1.53 N N
5 C22 N23 C N doub 1.32 N Y
6 C22 C21 C C sing 1.38 N Y
7 C27 C21 C C sing 1.51 N N
8 N23 C16 N C sing 1.33 N Y
9 C21 C20 C C doub 1.39 N Y
10 C16 O17 C O sing 1.36 N N
11 C16 C15 C C doub 1.38 N Y
12 C20 C15 C C sing 1.39 N Y
13 O17 C18 O C sing 1.42 N N
14 C26 C25 C C sing 1.54 N N
15 C26 C18 C C sing 1.53 N N
16 C15 C14 C C sing 1.51 N N
17 C25 C24 C C sing 1.54 N N
18 C18 C24 C C sing 1.53 N N
19 C18 C19 C C sing 1.53 N N
20 C14 C19 C C sing 1.53 N N
21 C14 N4 C N sing 1.47 N N
22 N4 C3 N C sing 1.47 N N
23 O5 C2 O C sing 1.43 N N
24 O34 C33 O C doub 1.21 N N
25 C3 C2 C C sing 1.53 N N
26 C2 C1 C C sing 1.53 N N
27 C1 C7 C C sing 1.53 N N
28 C1 N6 C N sing 1.46 N N
29 C33 N6 C N sing 1.35 N N
30 C33 C35 C C sing 1.51 N N
31 C13 C12 C C doub 1.38 N Y
32 C13 C8 C C sing 1.38 N Y
33 C7 C8 C C sing 1.51 N N
34 C42 C35 C C sing 1.53 N N
35 C35 O36 C O sing 1.43 N N
36 C12 C11 C C sing 1.38 N Y
37 C8 C9 C C doub 1.38 N Y
38 O36 C37 O C sing 1.43 N N
39 C11 C10 C C doub 1.4 N Y
40 C9 C10 C C sing 1.4 N Y
41 C10 C32 C C sing 1.48 N N
42 C32 N38 C N doub 1.3 N Y
43 C32 S41 C S sing 1.76 N Y
44 N38 C39 N C sing 1.31 N Y
45 S41 C40 S C sing 1.76 N Y
46 C39 C40 C C doub 1.34 N Y
47 C24 H1 C H sing 1.09 N N
48 C24 H2 C H sing 1.09 N N
49 C25 H3 C H sing 1.09 N N
50 C25 H4 C H sing 1.09 N N
51 C26 H5 C H sing 1.09 N N
52 C26 H6 C H sing 1.09 N N
53 C19 H7 C H sing 1.09 N N
54 C19 H8 C H sing 1.09 N N
55 C22 H9 C H sing 1.08 N N
56 C27 H10 C H sing 1.09 N N
57 C27 H11 C H sing 1.09 N N
58 C30 H12 C H sing 1.09 N N
59 C30 H13 C H sing 1.09 N N
60 C30 H14 C H sing 1.09 N N
61 C31 H15 C H sing 1.09 N N
62 C31 H16 C H sing 1.09 N N
63 C31 H17 C H sing 1.09 N N
64 C29 H18 C H sing 1.09 N N
65 C29 H19 C H sing 1.09 N N
66 C29 H20 C H sing 1.09 N N
67 C20 H21 C H sing 1.08 N N
68 C14 H22 C H sing 1.09 N N
69 N4 H23 N H sing 1.01 N N
70 C3 H25 C H sing 1.09 N N
71 C3 H26 C H sing 1.09 N N
72 C2 H27 C H sing 1.09 N N
73 O5 H28 O H sing 0.97 N N
74 C1 H29 C H sing 1.09 N N
75 N6 H30 N H sing 0.97 N N
76 C35 H31 C H sing 1.09 N N
77 C42 H32 C H sing 1.09 N N
78 C42 H33 C H sing 1.09 N N
79 C42 H34 C H sing 1.09 N N
80 C37 H35 C H sing 1.09 N N
81 C37 H36 C H sing 1.09 N N
82 C37 H37 C H sing 1.09 N N
83 C7 H38 C H sing 1.09 N N
84 C7 H39 C H sing 1.09 N N
85 C9 H40 C H sing 1.08 N N
86 C13 H41 C H sing 1.08 N N
87 C12 H42 C H sing 1.08 N N
88 C11 H43 C H sing 1.08 N N
89 C39 H44 C H sing 1.08 N N
90 C40 H45 C H sing 1.08 N N