Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0DV    

Bonds between two atoms of the molecule

Total Number of Bonds: 79


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3 C3 O C sing 1.43 N N
2 C6 O6 C O sing 1.43 N N
3 C6 C5 C C sing 1.53 N N
4 C3 C2 C C sing 1.53 N N
5 C3 C4 C C sing 1.53 N N
6 C2 O2 C O sing 1.43 N N
7 C2 C1 C C sing 1.53 N N
8 O4 C4 O C sing 1.43 N N
9 C4 C5 C C sing 1.53 N N
10 C5 O5 C O sing 1.43 N N
11 O5 C1 O C sing 1.43 N N
12 C1 O1 C O sing 1.43 N N
13 O1 CAG O C sing 1.42 N N
14 OAU CAH O C sing 1.43 N N
15 CAG CAF C C sing 1.51 N N
16 CAG CAH C C sing 1.51 N N
17 CAO CAE C C sing 1.53 N N
18 CAR CAP C C sing 1.53 N N
19 CAF CAN C C doub 1.31 N N
20 CAF CAE C C sing 1.5 N N
21 CAH CAA C C sing 1.5 N N
22 CAP CAN C C sing 1.5 N N
23 CAP CAQ C C sing 1.53 N N
24 CAN CAM C C sing 1.51 N N
25 CAE CAL C C sing 1.55 N N
26 CAE CAD C C sing 1.49 N N
27 CAL CAM C C sing 1.53 N N
28 CAS CAA C C sing 1.53 N N
29 CAA CAB C C sing 1.49 N N
30 CAD CAC C C doub 1.3 E N
31 CAB CAC C C sing 1.49 N N
32 CAB CAI C C sing 1.55 N N
33 CAC CAK C C sing 1.53 N N
34 CAV CAK C C sing 1.53 N N
35 CAV OBH C O sing 1.43 N N
36 CAI CAJ C C sing 1.54 N N
37 CAK CAJ C C sing 1.53 N N
38 CAQ H1 C H sing 1.09 N N
39 CAQ H2 C H sing 1.09 N N
40 CAQ H3 C H sing 1.09 N N
41 CAP H4 C H sing 1.09 N N
42 CAR H5 C H sing 1.09 N N
43 CAR H6 C H sing 1.09 N N
44 CAR H7 C H sing 1.09 N N
45 CAM H8 C H sing 1.09 N N
46 CAM H9 C H sing 1.08 N N
47 CAL H10 C H sing 1.08 N N
48 CAL H11 C H sing 1.08 N N
49 CAO H12 C H sing 1.09 N N
50 CAO H13 C H sing 1.09 N N
51 CAO H14 C H sing 1.09 N N
52 CAD H15 C H sing 1.11 N N
53 CAK H16 C H sing 1.09 N N
54 CAV H17 C H sing 1.09 N N
55 CAV H18 C H sing 1.09 N N
56 OBH H19 O H sing 0.97 N N
57 CAJ H20 C H sing 1.09 N N
58 CAJ H21 C H sing 1.09 N N
59 CAI H22 C H sing 1.08 N N
60 CAI H23 C H sing 1.08 N N
61 CAB H24 C H sing 1.13 N N
62 CAA H25 C H sing 1.14 N N
63 CAS H26 C H sing 1.09 N N
64 CAS H27 C H sing 1.09 N N
65 CAS H28 C H sing 1.09 N N
66 CAH H29 C H sing 1.12 N N
67 OAU H30 O H sing 0.97 N N
68 CAG H31 C H sing 1.12 N N
69 C1 H32 C H sing 1.09 N N
70 C5 H33 C H sing 1.09 N N
71 C6 H34 C H sing 1.09 N N
72 C6 H35 C H sing 1.09 N N
73 O6 H36 O H sing 0.97 N N
74 C4 H37 C H sing 1.09 N N
75 O4 H38 O H sing 0.97 N N
76 C3 H39 C H sing 1.09 N N
77 O3 H40 O H sing 0.97 N N
78 C2 H41 C H sing 1.09 N N
79 O2 H42 O H sing 0.97 N N