Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YPZ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C N N N 0 5.16 -1.302 -0.114
2 C1' C C1' N Y N 0 -3.978 -0.239 0.071
3 C2' C C2' N Y N 0 -5.18 0.445 -0.068
4 C3' C C3' N Y N 0 -6.367 -0.256 -0.143
5 C4' C C4' N Y N 0 -6.361 -1.638 -0.081
6 C5' C C5' N Y N 0 -5.167 -2.322 0.056
7 C6' C C6' N Y N 0 -3.976 -1.628 0.133
8 CA C CA S N N 0 3.815 -0.708 -0.444
9 CB C CB N N N 0 3.16 -0.187 0.836
10 CD1 C CD1 N N N 0 1.899 1.873 0.109
11 CD2 C CD2 N N N 0 0.704 -0.166 0.547
12 CE1 C CE1 N N N 0 0.715 2.552 -0.217
13 CE2 C CE2 N N N 0 -0.512 0.488 0.225
14 CG C CG N N N 0 1.872 0.515 0.491
15 CZ C CZ N N N 0 -0.483 1.899 -0.167
16 H H H N N N 0 2.826 -2.513 -0.414
17 H1 H H1 N N N 0 -2.78 1.434 0.104
18 H2 H H2 N N Y 0 2.075 -1.351 -1.337
19 H2' H H2' N N N 0 -5.185 1.524 -0.117
20 H3' H H3' N N N 0 -7.301 0.275 -0.251
21 H4' H H4' N N N 0 -7.291 -2.183 -0.141
22 H5' H H5' N N N 0 -5.167 -3.401 0.108
23 H6' H H6' N N N 0 -3.044 -2.164 0.24
24 HA H HA N N N 0 3.943 0.114 -1.148
25 HB2 H HB2 N N N 0 2.95 -1.023 1.503
26 HB3 H HB3 N N N 0 3.834 0.512 1.331
27 HD2 H HD2 N N N 0 0.698 -1.206 0.837
28 HE1 H HE1 N N N 0 0.751 3.592 -0.508
29 HH H HH N N N 0 -1.505 3.475 -0.725
30 HXT H HXT N N Y 0 7.064 -0.927 0.273
31 N N N N N N 0 2.96 -1.739 -1.047
32 NX1 N NX1 N N N 0 -2.777 0.465 0.147
33 NX2 N NX2 N N N 0 -1.663 -0.172 0.276
34 O O O N N N 0 5.283 -2.499 -0.0090
35 OH O OH N N N 0 -1.631 2.548 -0.48
36 OX1 O OX1 N N N 0 2.968 2.466 0.063
37 OXT O OXT N N Y 0 6.222 -0.5 0.063