Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YI4

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 85


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O03 O O03 N N N 0 7.529 -3.488 0.844
2 C25 C C25 N N N 0 8.189 -2.343 0.301
3 C26 C C26 N N N 0 8.612 -1.411 1.438
4 C27 C C27 N N N 0 9.427 -2.79 -0.48
5 C24 C C24 N N N 0 7.234 -1.602 -0.637
6 C23 C C23 N N N 0 6.057 -1.047 0.168
7 C22 C C22 N N N 0 5.102 -0.306 -0.771
8 C20 C C20 R N N 0 3.925 0.249 0.034
9 C21 C C21 N N N 0 4.432 1.308 1.015
10 C17 C C17 R N N 0 2.909 0.881 -0.919
11 C16 C C16 N N N 0 2.329 -0.192 -1.877
12 C15 C C15 N N N 0 0.787 -0.167 -1.679
13 C14 C C14 R N N 0 0.537 1.247 -1.149
14 C13 C C13 R N N 0 1.712 1.408 -0.141
15 C18 C C18 N N N 0 1.463 0.507 1.07
16 C12 C C12 N N N 0 1.728 2.848 0.316
17 C11 C C11 N N N 0 0.465 3.079 1.163
18 C09 C C09 S N N 0 -0.809 2.795 0.369
19 C28 C C28 N N N 0 -1.015 3.903 -0.666
20 C29 C C29 N N N 0 -1.265 5.21 0.04
21 C30 C C30 N N N 0 -0.515 6.252 -0.224
22 C08 C C08 N N N 0 -0.712 1.455 -0.346
23 C07 C C07 N N N 0 -1.667 0.534 -0.264
24 C06 C C06 N N N 0 -2.872 0.794 0.54
25 C05 C C05 N N N 0 -3.764 -0.172 0.73
26 C10 C C10 N N N 0 -5.085 0.123 1.403
27 C01 C C01 R N N 0 -6.219 -0.335 0.477
28 O01 O O01 N N N 0 -6.291 0.532 -0.658
29 C04 C C04 N N N 0 -3.479 -1.584 0.271
30 C03 C C03 R N N 0 -4.617 -2.037 -0.653
31 O02 O O02 N N N 0 -4.505 -3.441 -0.898
32 C02 C C02 N N N 0 -5.932 -1.748 0.023
33 C32 C C32 N N N 0 -6.812 -2.7 0.21
34 C33 C C33 N N N 0 -8.184 -2.365 0.735
35 O04 O O04 N N N 0 -9.167 -3.089 -0.0090
36 H1 H H1 N N N 0 8.077 -4.007 1.449
37 H2 H H2 N N N 0 9.292 -1.939 2.106
38 H3 H H3 N N N 0 9.115 -0.538 1.024
39 H4 H H4 N N N 0 7.731 -1.093 1.994
40 H5 H H5 N N N 0 9.125 -3.454 -1.29
41 H6 H H6 N N N 0 9.93 -1.916 -0.894
42 H7 H H7 N N N 0 10.107 -3.318 0.188
43 H8 H H8 N N N 0 7.764 -0.78 -1.12
44 H9 H H9 N N N 0 6.863 -2.29 -1.396
45 H10 H H10 N N N 0 5.527 -1.869 0.65
46 H11 H H11 N N N 0 6.428 -0.359 0.927
47 H12 H H12 N N N 0 5.632 0.516 -1.253
48 H13 H H13 N N N 0 4.731 -0.994 -1.53
49 H14 H H14 N N N 0 3.449 -0.561 0.587
50 H15 H H15 N N N 0 4.907 2.117 0.462
51 H16 H H16 N N N 0 3.593 1.702 1.589
52 H17 H H17 N N N 0 5.155 0.857 1.694
53 H18 H H18 N N N 0 3.374 1.686 -1.488
54 H19 H H19 N N N 0 2.577 0.055 -2.909
55 H20 H H20 N N N 0 2.724 -1.175 -1.622
56 H21 H H21 N N N 0 0.272 -0.32 -2.628
57 H22 H H22 N N N 0 0.48 -0.913 -0.947
58 H23 H H23 N N N 0 0.613 1.98 -1.953
59 H24 H H24 N N N 0 1.537 -0.538 0.767
60 H25 H H25 N N N 0 2.208 0.716 1.838
61 H26 H H26 N N N 0 0.467 0.701 1.468
62 H27 H H27 N N N 0 2.617 3.034 0.919
63 H28 H H28 N N N 0 1.722 3.511 -0.548
64 H29 H H29 N N N 0 0.495 2.423 2.033
65 H30 H H30 N N N 0 0.448 4.115 1.5
66 H31 H H31 N N N 0 -1.66 2.777 1.05
67 H32 H H32 N N N 0 -0.123 3.99 -1.287
68 H33 H H33 N N N 0 -1.872 3.659 -1.293
69 H35 H H35 N N N 0 -2.062 5.289 0.765
70 H36 H H36 N N N 0 0.282 6.173 -0.949
71 H37 H H37 N N N 0 -0.695 7.188 0.282
72 H39 H H39 N N N 0 -1.559 -0.404 -0.787
73 H40 H H40 N N N 0 -3.03 1.769 0.976
74 H41 H H41 N N N 0 -5.143 -0.419 2.347
75 H42 H H42 N N N 0 -5.17 1.193 1.589
76 H43 H H43 N N N 0 -7.166 -0.309 1.017
77 H44 H H44 N N N 0 -6.461 1.457 -0.436
78 H45 H H45 N N N 0 -2.534 -1.609 -0.273
79 H46 H H46 N N N 0 -3.421 -2.245 1.135
80 H47 H H47 N N N 0 -4.559 -1.496 -1.597
81 H48 H H48 N N N 0 -3.675 -3.702 -1.321
82 H49 H H49 N N N 0 -6.553 -3.725 -0.011
83 H50 H H50 N N N 0 -8.248 -2.642 1.787
84 H51 H H51 N N N 0 -8.363 -1.295 0.628
85 H52 H H52 N N N 0 -10.076 -2.921 0.275