Chemical Components in the PDB

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  • 0MK (Stereoisomer)
  • ARA (Stereoisomer)
  • ARB (Stereoisomer)
  • HSY (Stereoisomer)
  • LXC (Stereoisomer)
  • LDY (Stereoisomer)
  • RIP (Stereoisomer)
  • XYP (Stereoisomer)

PDBeChem : Atoms of Molecule

 Molecule : XYS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 20


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 -0.639 0.258 -1.454
2 C2 C C2 R N N 0 0.752 0.486 -0.86
3 C3 C C3 S N N 0 0.832 -0.202 0.506
4 C4 C C4 R N N 0 -0.335 0.286 1.37
5 C5 C C5 N N N 0 -1.645 0.073 0.608
6 O1 O O1 N N Y 0 -0.876 -1.145 -1.582
7 O2 O O2 N N N 0 1.74 -0.064 -1.734
8 O3 O O3 N N N 0 2.072 0.126 1.136
9 O4 O O4 N N N 0 -0.368 -0.453 2.592
10 O5 O O5 N N N 0 -1.628 0.83 -0.6
11 H1 H H1 N N N 0 -0.695 0.726 -2.437
12 H2 H H2 N N N 0 0.927 1.555 -0.74
13 H3 H H3 N N N 0 0.763 -1.282 0.377
14 H4 H H4 N N N 0 -0.208 1.346 1.589
15 H51 H 1H5 N N N 0 -1.759 -0.984 0.371
16 H52 H 2H5 N N N 0 -2.481 0.397 1.227
17 HO1 H HO1 N N N 0 -1.759 -1.246 -1.963
18 HO2 H HO2 N N N 0 1.65 0.393 -2.581
19 HO3 H HO3 N N N 0 2.08 -0.326 1.991
20 HO4 H HO4 N N N 0 -1.117 -0.117 3.103