Chemical Components in the PDB

pdbe.org/chem
spacer
  • LDY (Stereoisomer)
  • RIP (Stereoisomer)
  • ARB (Stereoisomer)
  • HSY (Stereoisomer)
  • 0MK (Stereoisomer)
  • ARA (Stereoisomer)
  • XYS (Stereoisomer)
  • LXC (Stereoisomer)

PDBeChem : Atoms of Molecule

 Molecule : XYP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 20


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O4A O O4A N N Y 0 0.501 -0.13 -2.746
2 C1B C C1B R N N 0 0.509 0.253 -1.37
3 C2B C C2B R N N 0 -0.78 -0.228 -0.701
4 C3B C C3B S N N 0 -0.779 0.213 0.766
5 C4B C C4B R N N 0 0.519 -0.269 1.423
6 C5B C C5B N N N 0 1.71 0.215 0.593
7 O2B O O2B N N N 0 -1.907 0.337 -1.372
8 O3B O O3B N N N 0 -1.904 -0.354 1.439
9 O4B O O4B N N N 0 0.611 0.26 2.747
10 O5B O O5B N N N 0 1.637 -0.331 -0.721
11 HO4A H HO4A N N N 0 1.325 0.194 -3.132
12 H1B H H1B N N N 0 0.571 1.338 -1.297
13 H2B H H2B N N N 0 -0.833 -1.316 -0.752
14 H3B H H3B N N N 0 -0.831 1.301 0.82
15 H4B H H4B N N N 0 0.523 -1.358 1.465
16 H5B1 H 1H5B N N N 0 1.692 1.303 0.535
17 H5B2 H 2H5B N N N 0 2.637 -0.105 1.068
18 HO2B H HO2B N N N 0 -1.865 0.037 -2.291
19 HO3B H HO3B N N N 0 -1.864 -0.051 2.356
20 HO4B H HO4B N N N 0 1.441 -0.064 3.121