Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : X8A

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O9 O O9 N N N 0 0.436 -2.78 0.589
2 C7 C C7 N N N 0 -0.265 -1.924 -0.171
3 O8 O O8 N N N 0 -0.827 -2.319 -1.165
4 C1 C C1 R N N 0 -0.35 -0.47 0.215
5 N6 N N6 N N N 0 -0.382 -0.354 1.679
6 C18 C C18 N N N 0 -0.466 1.053 2.094
7 C2 C C2 N N N 0 0.871 0.275 -0.329
8 C3 C C3 N N N 0 2.145 -0.335 0.26
9 C4 C C4 N N N 0 3.365 0.41 -0.284
10 C5 C C5 N N N 0 4.639 -0.2 0.304
11 B19 B B19 N N N -1 5.913 0.577 -0.264
12 O22 O O22 N N N 0 7.051 0.032 0.262
13 O21 O O21 N N N 0 5.943 0.469 -1.626
14 O20 O O20 N N N 0 5.836 1.896 0.087
15 C10 C C10 N N N 0 -1.624 0.14 -0.373
16 C11 C C11 N N N 0 -2.848 -0.521 0.265
17 N12 N N12 N N N 0 -4.07 0.065 -0.3
18 C17 C C17 N N N 0 -5.256 -0.699 0.107
19 C16 C C16 N N N 0 -6.49 -0.151 -0.614
20 C15 C C15 N N N 0 -6.667 1.328 -0.259
21 C14 C C14 N N N 0 -5.399 2.093 -0.649
22 C13 C C13 N N N 0 -4.197 1.48 0.073
23 H1 H H1 N N N 0 0.462 -3.703 0.3
24 H2 H H2 N N N 0 0.417 -0.806 2.096
25 H4 H H4 N N N 0 -0.488 1.111 3.182
26 H5 H H5 N N N 0 0.403 1.595 1.719
27 H6 H H6 N N N 0 -1.374 1.499 1.688
28 H7 H H7 N N N 0 0.895 0.189 -1.415
29 H8 H H8 N N N 0 0.809 1.327 -0.049
30 H9 H H9 N N N 0 2.121 -0.249 1.346
31 H10 H H10 N N N 0 2.206 -1.387 -0.02
32 H14 H H14 N N N 0 4.701 -1.252 0.024
33 H11 H H11 N N N 0 3.389 0.324 -1.371
34 H12 H H12 N N N 0 3.303 1.462 -0.005
35 H13 H H13 N N N 0 4.615 -0.114 1.39
36 H15 H H15 N N N 0 7.098 0.074 1.227
37 H16 H H16 N N N 0 5.165 0.836 -2.067
38 H17 H H17 N N N 0 6.578 2.431 -0.226
39 H18 H H18 N N N 0 -1.641 1.211 -0.169
40 H19 H H19 N N N 0 -1.642 -0.025 -1.45
41 H20 H H20 N N N 0 -2.83 -1.591 0.061
42 H21 H H21 N N N 0 -2.829 -0.356 1.342
43 H23 H H23 N N N 0 -5.12 -1.748 -0.155
44 H24 H H24 N N N 0 -5.395 -0.609 1.184
45 H25 H H25 N N N 0 -6.358 -0.254 -1.691
46 H29 H H29 N N N 0 -5.25 2.026 -1.727
47 H26 H H26 N N N 0 -7.373 -0.709 -0.301
48 H27 H H27 N N N 0 -7.519 1.734 -0.804
49 H28 H H28 N N N 0 -6.839 1.428 0.812
50 H30 H H30 N N N 0 -5.502 3.139 -0.361
51 H31 H H31 N N N 0 -4.34 1.56 1.15
52 H32 H H32 N N N 0 -3.291 2.013 -0.214