Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VGH

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CL CL CL N N N 0 2.709 3.05 0.802
2 C13 C C13 N Y N 0 4.031 1.971 0.487
3 C3 C C3 N Y N 0 5.322 2.343 0.82
4 C2 C C2 N Y N 0 6.376 1.484 0.57
5 C12 C C12 N Y N 0 6.14 0.251 -0.014
6 F F F N N N 0 7.17 -0.589 -0.258
7 C17 C C17 N Y N 0 3.794 0.737 -0.091
8 C18 C C18 N Y N 0 4.848 -0.121 -0.347
9 CL2 CL CL2 N N N 0 4.551 -1.667 -1.079
10 C21 C C21 R N N 0 2.387 0.33 -0.447
11 C1 C C1 N N N 0 2.196 0.428 -1.962
12 O27 O O27 N N N 0 2.159 -1.016 -0.025
13 C15 C C15 N Y N 0 0.872 -1.375 0.227
14 C4 C C4 N Y N 0 -0.165 -0.494 -0.032
15 C19 C C19 N Y N 0 0.578 -2.637 0.746
16 N22 N N22 N N N 0 1.612 -3.533 1.006
17 N23 N N23 N Y N 0 -0.672 -2.993 0.993
18 C5 C C5 N Y N 0 -1.685 -2.18 0.763
19 C14 C C14 N Y N 0 -1.473 -0.908 0.243
20 C16 C C16 N Y N 0 -2.62 -0.001 -0.017
21 C6 C C6 N Y N 0 -2.546 1.305 -0.539
22 C7 C C7 N Y N 0 -3.936 -0.283 0.2
23 N26 N N26 N Y N 0 -4.652 0.801 -0.164
24 N24 N N24 N Y N 0 -3.761 1.779 -0.622
25 C20 C C20 N N N 0 -6.109 0.931 -0.095
26 C8 C C8 N N N 0 -6.736 0.339 -1.36
27 C10 C C10 N N N 0 -8.26 0.423 -1.256
28 N25 N N25 N N N 0 -8.712 -0.318 -0.071
29 C11 C C11 N N N 0 -8.161 0.262 1.16
30 C9 C C9 N N N 0 -6.634 0.173 1.128
31 H3 H H3 N N N 0 5.506 3.305 1.274
32 H2 H H2 N N N 0 7.383 1.775 0.829
33 H21 H H21 N N N 0 1.68 0.992 0.052
34 H11C H H11C N N N 0 2.37 1.455 -2.284
35 H12C H H12C N N N 0 2.903 -0.234 -2.461
36 H13C H H13C N N N 0 1.179 0.134 -2.22
37 H4 H H4 N N N 0 0.031 0.488 -0.437
38 H221 H H221 N N N 0 2.531 -3.277 0.827
39 H222 H H222 N N N 0 1.414 -4.411 1.366
40 H5 H H5 N N N 0 -2.692 -2.507 0.977
41 H6 H H6 N N N 0 -1.642 1.825 -0.822
42 H7 H H7 N N N 0 -4.334 -1.207 0.593
43 H20 H H20 N N N 0 -6.377 1.985 -0.014
44 H81C H H81C N N N 0 -6.399 0.902 -2.231
45 H82C H H82C N N N 0 -6.435 -0.704 -1.462
46 H91C H H91C N N N 0 -6.331 -0.872 1.065
47 H92C H H92C N N N 0 -6.224 0.618 2.035
48 H101 H H101 N N N 0 -8.562 1.467 -1.168
49 H102 H H102 N N N 0 -8.71 -0.011 -2.149
50 H25 H H25 N N N 0 -9.72 -0.358 -0.032
51 H111 H H111 N N N 0 -8.463 1.306 1.237
52 H112 H H112 N N N 0 -8.538 -0.289 2.022