Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TTP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PA P PA S N N 0 -0.769 0.002 1.536
2 O1A O O1A N N N 0 0.046 -1.209 1.299
3 O2A O O2A N N N 0 -2.194 -0.422 2.153
4 O3A O O3A N N N 0 -0.004 0.97 2.571
5 PB P PB S N N 0 0.188 0.135 3.934
6 O1B O O1B N N N 0 -1.137 -0.257 4.463
7 O2B O O2B N N N 0 1.059 -1.184 3.636
8 O3B O O3B N N N 0 0.95 1.048 5.019
9 PG P PG N N N 0 1.108 0.155 6.349
10 O1G O O1G N N N 0 1.895 -1.058 6.038
11 O2G O O2G N N N 0 1.867 1.011 7.483
12 O3G O O3G N N N 0 -0.348 -0.271 6.885
13 O5' O O5* N N N 0 -0.996 0.777 0.144
14 C5' C C5* N N N 0 -1.675 -0.129 -0.727
15 C4' C C4* R N N 0 -1.923 0.548 -2.076
16 O4' O O4* N N N 0 -0.674 0.818 -2.751
17 C3' C C3* S N N 0 -2.66 -0.413 -3.043
18 O3' O O3* N N N 0 -4.074 -0.341 -2.854
19 C2' C C2* N N N 0 -2.258 0.149 -4.428
20 C1' C C1* R N N 0 -0.978 0.96 -4.149
21 N1 N N1 N N N 0 0.128 0.438 -4.955
22 C2 C C2 N N N 0 0.513 -0.842 -4.809
23 O2 O O2 N N N 0 -0.062 -1.553 -4.008
24 N3 N N3 N N N 0 1.526 -1.347 -5.536
25 C4 C C4 N N N 0 2.171 -0.573 -6.432
26 O4 O O4 N N N 0 3.088 -1.03 -7.091
27 C5 C C5 N N N 0 1.779 0.777 -6.593
28 C5M C C5M N N N 0 2.487 1.664 -7.584
29 C6 C C6 N N N 0 0.76 1.258 -5.85
30 HOA2 H 2HOA N N N 0 -2.693 0.393 2.292
31 HOB2 H 2HOB N N N 0 1.913 -0.884 3.293
32 HOG2 H 2HOG N N N 0 1.94 0.441 8.261
33 HOG3 H 3HOG N N N 0 -0.827 0.546 7.076
34 H5'1 H 1H5* N N N 0 -2.629 -0.414 -0.283
35 H5'2 H 2H5* N N N 0 -1.063 -1.019 -0.874
36 H4' H H4* N N N 0 -2.492 1.468 -1.943
37 H3' H H3* N N N 0 -2.304 -1.436 -2.92
38 HO3' H *HO3 N N N 0 -4.476 -0.888 -3.543
39 H2'1 H 1H2* N N N 0 -3.042 0.796 -4.819
40 H2'2 H 2H2* N N N 0 -2.05 -0.663 -5.124
41 H1' H H1* N N N 0 -1.146 2.011 -4.387
42 HN3 H HN3 N N N 0 1.79 -2.273 -5.418
43 HM51 H 1HM5 N N N 0 3.274 1.098 -8.082
44 HM52 H 2HM5 N N N 0 1.773 2.022 -8.326
45 HM53 H 3HM5 N N N 0 2.926 2.514 -7.062
46 H6 H H6 N N N 0 0.445 2.285 -5.962