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PDBeChem : Atoms of Molecule
Molecule : TTP
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 46
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
PA |
P |
PA |
S |
N |
N |
0 |
-0.769 |
0.002 |
1.536 |
2 |
O1A |
O |
O1A |
N |
N |
N |
0 |
0.046 |
-1.209 |
1.299 |
3 |
O2A |
O |
O2A |
N |
N |
N |
0 |
-2.194 |
-0.422 |
2.153 |
4 |
O3A |
O |
O3A |
N |
N |
N |
0 |
-0.004 |
0.97 |
2.571 |
5 |
PB |
P |
PB |
S |
N |
N |
0 |
0.188 |
0.135 |
3.934 |
6 |
O1B |
O |
O1B |
N |
N |
N |
0 |
-1.137 |
-0.257 |
4.463 |
7 |
O2B |
O |
O2B |
N |
N |
N |
0 |
1.059 |
-1.184 |
3.636 |
8 |
O3B |
O |
O3B |
N |
N |
N |
0 |
0.95 |
1.048 |
5.019 |
9 |
PG |
P |
PG |
N |
N |
N |
0 |
1.108 |
0.155 |
6.349 |
10 |
O1G |
O |
O1G |
N |
N |
N |
0 |
1.895 |
-1.058 |
6.038 |
11 |
O2G |
O |
O2G |
N |
N |
N |
0 |
1.867 |
1.011 |
7.483 |
12 |
O3G |
O |
O3G |
N |
N |
N |
0 |
-0.348 |
-0.271 |
6.885 |
13 |
O5' |
O |
O5* |
N |
N |
N |
0 |
-0.996 |
0.777 |
0.144 |
14 |
C5' |
C |
C5* |
N |
N |
N |
0 |
-1.675 |
-0.129 |
-0.727 |
15 |
C4' |
C |
C4* |
R |
N |
N |
0 |
-1.923 |
0.548 |
-2.076 |
16 |
O4' |
O |
O4* |
N |
N |
N |
0 |
-0.674 |
0.818 |
-2.751 |
17 |
C3' |
C |
C3* |
S |
N |
N |
0 |
-2.66 |
-0.413 |
-3.043 |
18 |
O3' |
O |
O3* |
N |
N |
N |
0 |
-4.074 |
-0.341 |
-2.854 |
19 |
C2' |
C |
C2* |
N |
N |
N |
0 |
-2.258 |
0.149 |
-4.428 |
20 |
C1' |
C |
C1* |
R |
N |
N |
0 |
-0.978 |
0.96 |
-4.149 |
21 |
N1 |
N |
N1 |
N |
N |
N |
0 |
0.128 |
0.438 |
-4.955 |
22 |
C2 |
C |
C2 |
N |
N |
N |
0 |
0.513 |
-0.842 |
-4.809 |
23 |
O2 |
O |
O2 |
N |
N |
N |
0 |
-0.062 |
-1.553 |
-4.008 |
24 |
N3 |
N |
N3 |
N |
N |
N |
0 |
1.526 |
-1.347 |
-5.536 |
25 |
C4 |
C |
C4 |
N |
N |
N |
0 |
2.171 |
-0.573 |
-6.432 |
26 |
O4 |
O |
O4 |
N |
N |
N |
0 |
3.088 |
-1.03 |
-7.091 |
27 |
C5 |
C |
C5 |
N |
N |
N |
0 |
1.779 |
0.777 |
-6.593 |
28 |
C5M |
C |
C5M |
N |
N |
N |
0 |
2.487 |
1.664 |
-7.584 |
29 |
C6 |
C |
C6 |
N |
N |
N |
0 |
0.76 |
1.258 |
-5.85 |
30 |
HOA2 |
H |
2HOA |
N |
N |
N |
0 |
-2.693 |
0.393 |
2.292 |
31 |
HOB2 |
H |
2HOB |
N |
N |
N |
0 |
1.913 |
-0.884 |
3.293 |
32 |
HOG2 |
H |
2HOG |
N |
N |
N |
0 |
1.94 |
0.441 |
8.261 |
33 |
HOG3 |
H |
3HOG |
N |
N |
N |
0 |
-0.827 |
0.546 |
7.076 |
34 |
H5'1 |
H |
1H5* |
N |
N |
N |
0 |
-2.629 |
-0.414 |
-0.283 |
35 |
H5'2 |
H |
2H5* |
N |
N |
N |
0 |
-1.063 |
-1.019 |
-0.874 |
36 |
H4' |
H |
H4* |
N |
N |
N |
0 |
-2.492 |
1.468 |
-1.943 |
37 |
H3' |
H |
H3* |
N |
N |
N |
0 |
-2.304 |
-1.436 |
-2.92 |
38 |
HO3' |
H |
*HO3 |
N |
N |
N |
0 |
-4.476 |
-0.888 |
-3.543 |
39 |
H2'1 |
H |
1H2* |
N |
N |
N |
0 |
-3.042 |
0.796 |
-4.819 |
40 |
H2'2 |
H |
2H2* |
N |
N |
N |
0 |
-2.05 |
-0.663 |
-5.124 |
41 |
H1' |
H |
H1* |
N |
N |
N |
0 |
-1.146 |
2.011 |
-4.387 |
42 |
HN3 |
H |
HN3 |
N |
N |
N |
0 |
1.79 |
-2.273 |
-5.418 |
43 |
HM51 |
H |
1HM5 |
N |
N |
N |
0 |
3.274 |
1.098 |
-8.082 |
44 |
HM52 |
H |
2HM5 |
N |
N |
N |
0 |
1.773 |
2.022 |
-8.326 |
45 |
HM53 |
H |
3HM5 |
N |
N |
N |
0 |
2.926 |
2.514 |
-7.062 |
46 |
H6 |
H |
H6 |
N |
N |
N |
0 |
0.445 |
2.285 |
-5.962 |
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