Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TR5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2 O O2 N N N 0 -6.343 -0.568 -0.365
2 PB P PB N N N 0 -5.187 -1.302 0.196
3 O3 O O3 N N N 0 -5.636 -2.064 1.541
4 O1 O O1 N N N 0 -4.662 -2.379 -0.881
5 O5' O O5* N N N 0 -4.005 -0.264 0.536
6 C5' C C5* N N N 0 -3.461 0.64 -0.428
7 C4' C C4* R N N 0 -2.361 1.48 0.224
8 O4' O O4* N N N 0 -1.249 0.64 0.577
9 C3' C C3* S N N 0 -1.841 2.53 -0.776
10 O3' O O3* N N N 0 -2.045 3.85 -0.267
11 C2' C C2* R N N 0 -0.329 2.222 -0.9
12 O2' O O2* N N N 0 0.437 3.428 -0.934
13 C1' C C1* R N N 0 -0.052 1.428 0.403
14 N9 N N9 N Y N 0 1.118 0.562 0.241
15 C8 C C8 N Y N 0 1.062 -0.774 -0.122
16 C7 C C7 N Y N 0 2.307 -1.284 -0.184
17 C5 C C5 N Y N 0 3.172 -0.161 0.17
18 C4 C C4 N Y N 0 2.409 0.963 0.42
19 N3 N N3 N Y N 0 3.118 2.046 0.754
20 C2 C C2 N Y N 0 4.435 1.976 0.82
21 N1 N N1 N Y N 0 5.166 0.892 0.578
22 C6 C C6 N Y N 0 4.552 -0.235 0.234
23 N61 N N61 N N N 0 5.123 -1.449 -0.054
24 C62 C C62 N N N 0 6.579 -1.597 0.0040
25 N71 N N71 N N N 0 4.327 -2.549 -0.402
26 C72 C C72 N N N 0 3.02 -2.54 -0.478
27 N73 N N73 N N N 0 2.32 -3.69 -0.829
28 H1 H H1 N N N 0 -6.347 -2.707 1.41
29 H2 H H2 N N N 0 -3.904 -2.898 -0.58
30 H3 H H3 N N N 0 -3.041 0.074 -1.26
31 H4 H H4 N N N 0 -4.249 1.296 -0.796
32 H5 H H5 N N N 0 -2.75 1.973 1.115
33 H6 H H6 N N N 0 -2.334 2.414 -1.742
34 H7 H H7 N N N 0 -1.736 4.551 -0.857
35 H8 H H8 N N N 0 -0.127 1.609 -1.778
36 H9 H H9 N N N 0 0.233 4.002 -1.685
37 H10 H H10 N N N 0 0.089 2.108 1.244
38 H11 H H11 N N N 0 0.156 -1.325 -0.324
39 H12 H H12 N N N 0 4.964 2.876 1.094
40 H13 H H13 N N N 0 6.874 -1.899 1.009
41 H14 H H14 N N N 0 6.896 -2.355 -0.711
42 H15 H H15 N N N 0 7.051 -0.646 -0.242
43 H16 H H16 N N N 0 1.352 -3.67 -0.883
44 H17 H H17 N N N 0 2.8 -4.51 -1.021