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PDBeChem : Atoms of Molecule
Molecule : THM
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 31
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
O5' |
O |
O5* |
N |
N |
N |
0 |
2.274 |
-0.724 |
-3.79 |
2 |
C5' |
C |
C5* |
N |
N |
N |
0 |
1.208 |
0.202 |
-3.574 |
3 |
C4' |
C |
C4* |
R |
N |
N |
0 |
0.116 |
-0.463 |
-2.735 |
4 |
O4' |
O |
O4* |
N |
N |
N |
0 |
0.6 |
-0.76 |
-1.406 |
5 |
C3' |
C |
C3* |
S |
N |
N |
0 |
-1.055 |
0.519 |
-2.484 |
6 |
O3' |
O |
O3* |
N |
N |
N |
0 |
-1.993 |
0.481 |
-3.562 |
7 |
C2' |
C |
C2* |
N |
N |
N |
0 |
-1.681 |
-0.046 |
-1.186 |
8 |
C1' |
C |
C1* |
R |
N |
N |
0 |
-0.554 |
-0.889 |
-0.56 |
9 |
N1 |
N |
N1 |
N |
N |
N |
0 |
-0.246 |
-0.391 |
0.782 |
10 |
C2 |
C |
C2 |
N |
N |
N |
0 |
0.165 |
0.879 |
0.943 |
11 |
O2 |
O |
O2 |
N |
N |
N |
0 |
0.278 |
1.6 |
-0.029 |
12 |
N3 |
N |
N3 |
N |
N |
N |
0 |
0.454 |
1.363 |
2.165 |
13 |
C4 |
C |
C4 |
N |
N |
N |
0 |
0.329 |
0.578 |
3.254 |
14 |
O4 |
O |
O4 |
N |
N |
N |
0 |
0.59 |
1.015 |
4.36 |
15 |
C5 |
C |
C5 |
N |
N |
N |
0 |
-0.098 |
-0.762 |
3.099 |
16 |
C5M |
C |
C5M |
N |
N |
N |
0 |
-0.241 |
-1.662 |
4.299 |
17 |
C6 |
C |
C6 |
N |
N |
N |
0 |
-0.382 |
-1.222 |
1.861 |
18 |
HO5' |
H |
*HO5 |
N |
N |
N |
0 |
2.939 |
-0.266 |
-4.322 |
19 |
H5'1 |
H |
1H5* |
N |
N |
N |
0 |
0.792 |
0.508 |
-4.534 |
20 |
H5'2 |
H |
2H5* |
N |
N |
N |
0 |
1.588 |
1.077 |
-3.047 |
21 |
H4' |
H |
H4* |
N |
N |
N |
0 |
-0.241 |
-1.37 |
-3.222 |
22 |
H3' |
H |
H3* |
N |
N |
N |
0 |
-0.686 |
1.532 |
-2.328 |
23 |
HO3' |
H |
*HO3 |
N |
N |
N |
0 |
-2.738 |
1.04 |
-3.303 |
24 |
H2'1 |
H |
1H2* |
N |
N |
N |
0 |
-2.542 |
-0.673 |
-1.42 |
25 |
H2'2 |
H |
2H2* |
N |
N |
N |
0 |
-1.969 |
0.764 |
-0.517 |
26 |
H1' |
H |
H1* |
N |
N |
N |
0 |
-0.859 |
-1.934 |
-0.506 |
27 |
HN3 |
H |
HN3 |
N |
N |
N |
0 |
0.75 |
2.281 |
2.263 |
28 |
HM51 |
H |
1HM5 |
N |
N |
N |
0 |
0.031 |
-1.112 |
5.2 |
29 |
HM52 |
H |
2HM5 |
N |
N |
N |
0 |
-1.275 |
-1.999 |
4.378 |
30 |
HM53 |
H |
3HM5 |
N |
N |
N |
0 |
0.414 |
-2.525 |
4.186 |
31 |
H6 |
H |
H6 |
N |
N |
N |
0 |
-0.713 |
-2.24 |
1.723 |
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