Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TDW

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 S1 S S1 N Y N 0 1.374 1.969 -0.97
2 C2 C C2 N Y N 0 2.774 1.661 -0.038
3 N3 N N3 N Y N 1 2.692 0.499 0.517
4 C4 C C4 N Y N 0 1.604 -0.205 0.28
5 C5 C C5 N Y N 0 0.718 0.397 -0.519
6 C6 C C6 N N N 0 -0.608 -0.169 -0.958
7 C7 C C7 N N N 0 -1.692 0.234 0.044
8 O7 O O7 N N N 0 -2.949 -0.303 -0.372
9 PA P PA N N N 0 -4.315 -0.075 0.449
10 PB P PB N N N 0 -7.141 -0.484 -0.344
11 N1' N N1' N Y N 0 5.51 -1.529 -1.544
12 O1A O O1A N N N 0 -4.54 1.375 0.64
13 O1B O O1B N N N 0 -7.796 -1.119 -1.67
14 C2' C C2' N Y N 0 6.617 -1.972 -0.984
15 C27 C C27 S N N 0 3.935 2.609 0.113
16 O28 O O28 N N N 0 4.283 3.144 -1.166
17 C29 C C29 N N N 0 3.544 3.75 1.054
18 O2A O O2A N N N 0 -4.204 -0.794 1.885
19 O2B O O2B N N N 0 -7.76 -1.203 0.957
20 N3' N N3' N Y N 0 6.855 -1.818 0.303
21 O3A O O3A N N N 0 -5.547 -0.706 -0.373
22 O3B O O3B N N N 0 -7.437 0.966 -0.294
23 C4' C C4' N Y N 0 5.975 -1.202 1.087
24 N4' N N4' N N N 0 6.228 -1.042 2.44
25 C5' C C5' N Y N 0 4.791 -0.72 0.525
26 C6' C C6' N Y N 0 4.584 -0.905 -0.828
27 C7' C C7' N N N 0 3.764 -0.016 1.374
28 CM2 C CM2 N N N 0 7.639 -2.675 -1.839
29 CM4 C CM4 N N N 0 1.377 -1.576 0.863
30 H6 H H6 N N N 0 -0.861 0.221 -1.944
31 H6A H H6A N N N 0 -0.542 -1.257 -1.003
32 H7 H H7 N N N 0 -1.439 -0.156 1.03
33 H7A H H7A N N N 0 -1.758 1.321 0.089
34 HO1B H HO1B N N N 0 -8.757 -1.022 -1.72
35 H27 H H27 N N N 0 4.79 2.074 0.527
36 HO28 H HO28 N N N 0 5.024 3.764 -1.145
37 H29 H H29 N N N 0 4.384 4.436 1.163
38 H29A H H29A N N N 0 2.689 4.285 0.64
39 H29B H H29B N N N 0 3.279 3.342 2.029
40 HO2A H HO2A N N N 0 -4.056 -1.749 1.837
41 HO2B H HO2B N N N 0 -7.604 -2.156 0.991
42 HN4' H HN4' N N N 0 7.09 -1.297 2.805
43 HN4A H HN4A N N N 0 5.544 -0.674 3.021
44 H6' H H6' N N N 0 3.681 -0.545 -1.297
45 H7' H H7' N N N 0 4.236 0.812 1.903
46 H7'A H H7'A N N N 0 3.346 -0.717 2.096
47 HM2 H HM2 N N N 0 8.344 -1.945 -2.237
48 HM2A H HM2A N N N 0 8.177 -3.406 -1.235
49 HM2B H HM2B N N N 0 7.137 -3.183 -2.662
50 HM4 H HM4 N N N 0 0.876 -1.483 1.827
51 HM4A H HM4A N N N 0 0.754 -2.16 0.185
52 HM4B H HM4B N N N 0 2.335 -2.077 0.998