Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RPC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -2.553 3.523 -0.042
2 OP1 O OP1 N N N 0 -1.76 4.186 1.193
3 O5' O O5' N N N 0 -1.748 2.231 -0.565
4 C5' C C5' N N N 0 -1.559 1.058 0.228
5 C4' C C4' R N N 0 -0.754 0.028 -0.568
6 C3' C C3' S N N 0 -0.637 -1.281 0.237
7 O3' O O3' N N N 0 -1.224 -2.366 -0.484
8 C2' C C2' R N N 0 0.889 -1.495 0.392
9 O2' O O2' N N N 0 1.23 -2.872 0.215
10 C1' C C1' R N N 0 1.457 -0.632 -0.763
11 O4' O O4' N N N 0 0.58 0.515 -0.789
12 N1 N N1 N N N 0 2.833 -0.222 -0.473
13 C6 C C6 N N N 0 3.853 -0.668 -1.258
14 C5 C C5 N N N 0 5.121 -0.283 -0.98
15 C4 C C4 N N N 0 5.349 0.572 0.118
16 N4 N N4 N N N 0 6.627 0.98 0.424
17 N3 N N3 N N N 0 4.325 0.98 0.855
18 C2 C C2 N N N 0 3.082 0.596 0.566
19 O2 O O2 N N N 0 2.157 0.99 1.255
20 OP2 O OP2 N N N 0 -3.905 3.115 0.402
21 P2 P P2 N N N 0 -2.456 -3.233 0.085
22 OP4 O OP4 N N N 0 -1.985 -4.036 1.398
23 OP5 O OP5 N N N 0 -3.575 -2.329 0.435
24 OP6 O OP6 N N N 0 -2.941 -4.278 -1.038
25 H1 H H1 N N N 0 -0.864 4.478 0.974
26 H2 H H2 N N N 0 -1.017 1.317 1.138
27 H3 H H3 N N N 0 -2.529 0.637 0.491
28 H4 H H4 N N N 0 -1.242 -0.165 -1.523
29 H5 H H5 N N N 0 -1.11 -1.172 1.213
30 H6 H H6 N N N 0 1.237 -1.131 1.358
31 H7 H H7 N N N 0 2.176 -3.056 0.303
32 H8 H H8 N N N 0 1.41 -1.175 -1.707
33 H9 H H9 N N N 0 3.653 -1.323 -2.094
34 H10 H H10 N N N 0 5.944 -0.624 -1.589
35 H11 H H11 N N N 0 7.374 0.679 -0.117
36 H12 H H12 N N N 0 6.781 1.567 1.18
37 H14 H H14 N N N 0 -1.253 -4.649 1.243
38 H15 H H15 N N N 0 -3.682 -4.835 -0.764
39 OP3 O OP3 N N Y 0 -2.681 4.596 -1.235
40 H17 H H17 N N N 0 -3.156 5.402 -0.991