Chemical Components in the PDB

pdbe.org/chem
spacer
  • XYS (Stereoisomer)
  • HSY (Stereoisomer)
  • LXC (Stereoisomer)
  • 0MK (Stereoisomer)
  • ARA (Stereoisomer)
  • LDY (Stereoisomer)
  • XYP (Stereoisomer)
  • 64K (Stereoisomer)
  • ARB (Stereoisomer)

PDBeChem : Atoms of Molecule

 Molecule : RIP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 20


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 0.538 0.292 -1.219
2 C2 C C2 R N N 0 -0.651 -0.575 -0.803
3 C3 C C3 R N N 0 -0.96 -0.326 0.677
4 C4 C C4 R N N 0 0.322 -0.541 1.489
5 C5 C C5 N N N 0 1.438 0.324 0.899
6 H1 H H1 N N N 0 0.298 1.342 -1.049
7 H2 H H2 N N N 0 -0.405 -1.627 -0.95
8 H3 H H3 N N N 0 -1.729 -1.022 1.013
9 H4 H H4 N N N 0 0.611 -1.591 1.442
10 H51 H 1H5 N N N 0 1.138 1.371 0.927
11 H52 H 2H5 N N N 0 2.347 0.192 1.486
12 HO1 H HO1 N N N 0 1.563 0.653 -2.829
13 HO2 H HO2 N N N 0 -1.551 -0.402 -2.516
14 HO3 H HO3 N N N 0 -1.601 1.128 1.795
15 HO4 H HO4 N N N 0 0.926 -0.315 3.322
16 O1 O O1 N N Y 0 0.812 0.086 -2.606
17 O2 O O2 N N N 0 -1.791 -0.235 -1.595
18 O3 O O3 N N N 0 -1.419 1.015 0.852
19 O4 O O4 N N N 0 0.095 -0.167 2.849
20 O5 O O5 N N N 0 1.686 -0.061 -0.45