Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RA8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 72


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C27 C C27 N N N 0 4.546 1.147 -0.438
2 S26 S S26 N N N 0 4.247 0.451 1.211
3 C30 C C30 N Y N 0 5.989 1.565 -0.553
4 C31 C C31 N Y N 0 6.934 0.667 -1.014
5 C32 C C32 N Y N 0 8.258 1.05 -1.12
6 C33 C C33 N Y N 0 8.637 2.331 -0.764
7 C34 C C34 N Y N 0 7.692 3.229 -0.303
8 C35 C C35 N Y N 0 6.368 2.847 -0.202
9 O15 O O15 N N N 0 4.343 1.462 2.204
10 O29 O O29 N N N 0 4.927 -0.789 1.359
11 N25 N N25 N N N 0 2.643 0.038 1.2
12 C19 C C19 S N N 0 2.148 -0.955 0.244
13 C18 C C18 N N N 0 0.783 -0.544 -0.245
14 O24 O O24 N N N 0 0.157 0.308 0.349
15 C20 C C20 N N N 0 2.056 -2.32 0.928
16 C21 C C21 N N N 0 1.256 -2.188 2.225
17 C22 C C22 N N N 0 1.512 -3.41 3.11
18 C23 C C23 N N N 0 -0.236 -2.099 1.898
19 N16 N N16 N N N 0 0.257 -1.125 -1.342
20 C11 C C11 S N N 0 -1.003 -0.741 -1.994
21 C5 C C5 N N N 0 -2.153 -0.93 -1.037
22 O12 O O12 N N N 0 -2.048 -1.703 -0.109
23 C13 C C13 N N N 0 -1.184 -1.661 -3.22
24 C14 C C14 N N N 0 0.264 -2.133 -3.516
25 C17 C C17 N N N 0 0.851 -2.25 -2.087
26 N10 N N10 N N N 0 -3.297 -0.24 -1.214
27 C9 C C9 N N N 0 -4.414 -0.424 -0.285
28 C8 C C8 N N N 0 -5.582 0.469 -0.708
29 C7 C C7 N N N 0 -6.749 0.277 0.263
30 C6 C C6 N N N 0 -7.917 1.17 -0.161
31 N4 N N4 N N N 0 -9.034 0.986 0.769
32 C2 C C2 N N N 0 -10.202 1.689 0.589
33 N1 N N1 N N N 0 -10.314 2.52 -0.409
34 N3 N N3 N N N 0 -11.25 1.517 1.461
35 H271 H H271 N N N 0 4.324 0.396 -1.195
36 H272 H H272 N N N 0 3.903 2.015 -0.587
37 H31 H H31 N N N 0 6.637 -0.334 -1.292
38 H32 H H32 N N N 0 8.996 0.349 -1.48
39 H33 H H33 N N N 0 9.672 2.63 -0.845
40 H34 H H34 N N N 0 7.989 4.229 -0.024
41 H35 H H35 N N N 0 5.629 3.549 0.155
42 H25 H H25 N N N 0 2.032 0.454 1.828
43 H19 H H19 N N N 0 2.833 -1.018 -0.602
44 H201 H H201 N N N 0 1.557 -3.026 0.264
45 H202 H H202 N N N 0 3.059 -2.682 1.155
46 H21 H H21 N N N 0 1.566 -1.286 2.753
47 H221 H H221 N N N 0 2.575 -3.473 3.343
48 H222 H H222 N N N 0 0.942 -3.315 4.034
49 H223 H H223 N N N 0 1.202 -4.312 2.582
50 H231 H H231 N N N 0 -0.488 -2.847 1.146
51 H232 H H232 N N N 0 -0.818 -2.282 2.801
52 H233 H H233 N N N 0 -0.465 -1.106 1.513
53 H11 H H11 N N N 0 -0.954 0.3 -2.312
54 H131 H H131 N N N 0 -1.824 -2.508 -2.975
55 H132 H H132 N N N 0 -1.588 -1.102 -4.064
56 H141 H H141 N N N 0 0.805 -1.39 -4.102
57 H142 H H142 N N N 0 0.264 -3.1 -4.018
58 H171 H H171 N N N 0 1.937 -2.155 -2.115
59 H172 H H172 N N N 0 0.563 -3.198 -1.635
60 H10 H H10 N N N 0 -3.381 0.378 -1.957
61 H91 H H91 N N N 0 -4.097 -0.154 0.723
62 H92 H H92 N N N 0 -4.731 -1.467 -0.299
63 H81 H H81 N N N 0 -5.899 0.199 -1.715
64 H82 H H82 N N N 0 -5.266 1.512 -0.694
65 H71 H H71 N N N 0 -6.432 0.547 1.27
66 H72 H H72 N N N 0 -7.065 -0.766 0.249
67 H61 H H61 N N N 0 -8.234 0.9 -1.168
68 H62 H H62 N N N 0 -7.601 2.213 -0.147
69 HN4 H HN4 N N N 0 -8.95 0.368 1.512
70 HN1 H HN1 N N N 0 -9.575 2.642 -1.025
71 HN31 H HN31 N N N 0 -12.074 2.013 1.334
72 HN32 H HN32 N N N 0 -11.166 0.899 2.204