Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PC1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 142


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O12 O O12 N N N -1 -4.835 10.111 -8.794
2 P P P N N N 0 -6.186 10.774 -8.629
3 O14 O O14 N N N 0 -6.334 12.267 -8.832
4 O13 O O13 N N N 0 -7.275 10.016 -9.587
5 C11 C C11 N N N 0 -7.528 8.635 -9.391
6 C12 C C12 N N N 0 -8.565 8.161 -10.39
7 N N N N N N 1 -8.852 6.724 -10.154
8 C13 C C13 N N N 0 -9.362 6.498 -8.724
9 C14 C C14 N N N 0 -9.923 6.216 -11.129
10 C15 C C15 N N N 0 -7.588 5.877 -10.35
11 O11 O O11 N N N 0 -6.771 10.371 -7.157
12 C1 C C1 N N N 0 -8.041 10.873 -6.756
13 C2 C C2 R N N 0 -8.379 10.37 -5.358
14 O21 O O21 N N N 0 -7.357 10.8 -4.456
15 C21 C C21 N N N 0 -7.188 12.153 -4.358
16 O22 O O22 N N N 0 -7.827 13.001 -4.966
17 C22 C C22 N N N 0 -6.077 12.439 -3.373
18 C23 C C23 N N N 0 -5.844 13.939 -3.192
19 C24 C C24 N N N 0 -4.748 14.209 -2.161
20 C25 C C25 N N N 0 -4.523 15.699 -1.887
21 C26 C C26 N N N 0 -3.477 15.968 -0.802
22 C27 C C27 N N N 0 -3.271 17.47 -0.594
23 C28 C C28 N N N 0 -2.226 17.802 0.476
24 C29 C C29 N N N 0 -1.931 19.291 0.686
25 C2A C C2A N N N 0 -0.82 19.555 1.705
26 C2B C C2B N N N 0 -0.553 21.055 1.853
27 C2C C C2C N N N 0 0.571 21.378 2.843
28 C2D C C2D N N N 0 0.819 22.879 3.009
29 C2E C C2E N N N 0 1.935 23.202 4.008
30 C2F C C2F N N N 0 2.167 24.704 4.195
31 C2G C C2G N N N 0 3.337 24.966 5.147
32 C2H C C2H N N N 0 3.6 26.454 5.389
33 C2I C C2I N N N 0 4.778 26.72 6.314
34 C3 C C3 N N N 0 -8.436 8.849 -5.312
35 O31 O O31 N N N 0 -8.728 8.434 -3.974
36 C31 C C31 N N N 0 -8.81 7.084 -3.78
37 O32 O O32 N N N 0 -8.658 6.226 -4.639
38 C32 C C32 N N N 0 -9.124 6.817 -2.326
39 C33 C C33 N N N 0 -9.21 5.321 -2.025
40 C34 C C34 N N N 0 -9.484 5.069 -0.541
41 C35 C C35 N N N 0 -9.509 3.583 -0.17
42 C36 C C36 N N N 0 -9.711 3.333 1.327
43 C37 C C37 N N N 0 -9.759 1.834 1.634
44 C38 C C38 N N N 0 -9.969 1.521 3.119
45 C39 C C39 N N N 0 -10.088 0.037 3.48
46 C3A C C3A N N N 0 -10.381 -0.209 4.962
47 C3B C C3B N N N 0 -10.515 -1.706 5.257
48 C3C C C3C N N N 0 -10.836 -2.009 6.724
49 C3D C C3D N N N 0 -10.943 -3.507 7.022
50 C3E C C3E N N N 0 -11.252 -3.811 8.492
51 C3F C C3F N N N 0 -11.334 -5.309 8.798
52 C3G C C3G N N N 0 -11.714 -5.553 10.261
53 C3H C C3H N N N 0 -11.789 -7.037 10.629
54 C3I C C3I N N N 0 -12.192 -7.284 12.074
55 H122 H 2H12 N N N 0 -9.512 8.694 -10.272
56 H111 H 1H11 N N N 0 -7.905 8.502 -8.372
57 H112 H 2H11 N N N 0 -6.587 8.083 -9.492
58 H121 H 1H12 N N N 0 -8.21 8.24 -11.421
59 H131 H 1H13 N N N 0 -10.222 7.152 -8.569
60 H132 H 2H13 N N N 0 -9.645 5.447 -8.633
61 H133 H 3H13 N N N 0 -8.55 6.746 -8.037
62 H141 H 1H14 N N N 0 -9.551 5.296 -11.584
63 H142 H 2H14 N N N 0 -10.834 6.03 -10.557
64 H143 H 3H14 N N N 0 -10.083 6.99 -11.882
65 H151 H 1H15 N N N 0 -7.138 6.163 -11.303
66 H152 H 2H15 N N N 0 -6.912 6.087 -9.519
67 H153 H 3H15 N N N 0 -7.887 4.827 -10.357
68 H11 H 1H1 N N N 0 -7.999 11.966 -6.792
69 H12 H 2H1 N N N 0 -8.775 10.524 -7.489
70 H2 H H2 N N N 0 -9.319 10.802 -4.998
71 H221 H 1H22 N N N 0 -5.161 11.965 -3.744
72 H222 H 2H22 N N N 0 -6.349 11.988 -2.412
73 H231 H 1H23 N N N 0 -5.572 14.379 -4.158
74 H232 H 2H23 N N N 0 -6.778 14.421 -2.876
75 H241 H 1H24 N N N 0 -3.808 13.75 -2.49
76 H242 H 2H24 N N N 0 -5.02 13.726 -1.214
77 H251 H 1H25 N N N 0 -4.231 16.203 -2.816
78 H252 H 2H25 N N N 0 -5.48 16.137 -1.578
79 H261 H 1H26 N N N 0 -3.796 15.507 0.14
80 H262 H 2H26 N N N 0 -2.527 15.506 -1.088
81 H271 H 1H27 N N N 0 -4.222 17.924 -0.289
82 H2B1 H 1H2B N N N 0 -0.275 21.468 0.875
83 H272 H 2H27 N N N 0 -2.998 17.943 -1.545
84 H281 H 1H28 N N N 0 -2.558 17.369 1.428
85 H282 H 2H28 N N N 0 -1.286 17.297 0.221
86 H291 H 1H29 N N N 0 -2.845 19.816 0.988
87 H292 H 2H29 N N N 0 -1.639 19.717 -0.282
88 H2A1 H 1H2A N N N 0 -1.107 19.138 2.676
89 H2A2 H 2H2A N N N 0 0.098 19.047 1.388
90 H2B2 H 2H2B N N N 0 -1.472 21.567 2.161
91 H2C1 H 1H2C N N N 0 1.491 20.899 2.483
92 H2C2 H 2H2C N N N 0 0.335 20.924 3.812
93 H2D1 H 1H2D N N N 0 1.096 23.307 2.038
94 H2D2 H 2H2D N N N 0 -0.101 23.382 3.327
95 H2E1 H 1H2E N N N 0 1.707 22.738 4.976
96 H2E2 H 2H2E N N N 0 2.862 22.738 3.647
97 H2F1 H 1H2F N N N 0 2.368 25.16 3.22
98 H2F2 H 2H2F N N N 0 1.264 25.175 4.599
99 H2G1 H 1H2G N N N 0 3.125 24.494 6.114
100 H2G2 H 2H2G N N N 0 4.246 24.492 4.757
101 H2H1 H 1H2H N N N 0 2.701 26.897 5.834
102 H2H2 H 2H2H N N N 0 3.765 26.964 4.433
103 H2I1 H 1H2I N N N 0 4.855 27.792 6.524
104 H2I2 H 2H2I N N N 0 5.723 26.403 5.862
105 H2I3 H 3H2I N N N 0 4.656 26.196 7.267
106 H31 H 1H3 N N N 0 -7.476 8.407 -5.599
107 H32 H 2H3 N N N 0 -9.225 8.464 -5.966
108 H321 H 1H32 N N N 0 -10.08 7.297 -2.088
109 H322 H 2H32 N N N 0 -8.334 7.272 -1.718
110 H331 H 1H33 N N N 0 -10.003 4.877 -2.637
111 H332 H 2H33 N N N 0 -8.272 4.832 -2.316
112 H341 H 1H34 N N N 0 -10.435 5.535 -0.256
113 H342 H 2H34 N N N 0 -8.702 5.556 0.055
114 H351 H 1H35 N N N 0 -10.296 3.075 -0.74
115 H352 H 2H35 N N N 0 -8.556 3.138 -0.482
116 H361 H 1H36 N N N 0 -8.894 3.798 1.891
117 H362 H 2H36 N N N 0 -10.644 3.802 1.653
118 H371 H 1H37 N N N 0 -8.813 1.373 1.322
119 H372 H 2H37 N N N 0 -10.543 1.357 1.035
120 H381 H 1H38 N N N 0 -9.136 1.957 3.684
121 H382 H 2H38 N N N 0 -10.876 2.033 3.463
122 H391 H 1H39 N N N 0 -9.175 -0.495 3.189
123 H392 H 2H39 N N N 0 -10.898 -0.394 2.878
124 H3A1 H 1H3A N N N 0 -9.574 0.212 5.57
125 H3A2 H 2H3A N N N 0 -11.308 0.305 5.244
126 H3B1 H 1H3B N N N 0 -11.319 -2.123 4.638
127 H3B2 H 2H3B N N N 0 -9.593 -2.224 4.967
128 H3C1 H 1H3C N N N 0 -11.788 -1.525 6.973
129 H3C2 H 2H3C N N N 0 -10.07 -1.551 7.36
130 H3D1 H 1H3D N N N 0 -11.743 -3.94 6.408
131 H3D2 H 2H3D N N N 0 -10.015 -4.017 6.74
132 H3E1 H 1H3E N N N 0 -10.494 -3.343 9.131
133 H3E2 H 2H3E N N N 0 -12.211 -3.341 8.743
134 H3F1 H 1H3F N N N 0 -12.075 -5.771 8.136
135 H3F2 H 2H3F N N N 0 -10.369 -5.787 8.594
136 H3G1 H 1H3G N N N 0 -10.969 -5.076 10.909
137 H3G2 H 2H3G N N N 0 -12.676 -5.073 10.478
138 H3H1 H 1H3H N N N 0 -10.802 -7.486 10.461
139 H3H2 H 2H3H N N N 0 -12.489 -7.552 9.961
140 H3I1 H 1H3I N N N 0 -12.133 -8.354 12.302
141 H3I2 H 2H3I N N N 0 -13.219 -6.961 12.266
142 H3I3 H 3H3I N N N 0 -11.527 -6.755 12.764