Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NGC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O9 O O8 N N N 0 3.805 3.745 -0.103
2 C9 C C8 N N N 0 2.412 3.444 -0.215
3 C8 C C7 R N N 0 2.191 1.952 0.04
4 O8 O O7 N N N 0 2.537 1.643 1.391
5 C7 C C6 R N N 0 0.72 1.606 -0.202
6 O7 O O6 N N N 0 0.374 1.915 -1.554
7 C6 C C5 R N N 0 0.498 0.114 0.053
8 O6 O O5 N N N 0 1.402 -0.646 -0.752
9 C2 C C1 R N N 0 1.296 -2.06 -0.571
10 C1 C C9 N N N 0 1.557 -2.403 0.873
11 O1B O O9B N N N 0 0.714 -1.976 1.827
12 O1A O O9A N N N 0 2.524 -3.062 1.173
13 O2 O O1 N N Y 0 2.257 -2.719 -1.398
14 C3 C C2 N N N 0 -0.112 -2.519 -0.959
15 C4 C C3 S N N 0 -1.138 -1.763 -0.109
16 O4 O O3 N N N 0 -2.458 -2.132 -0.515
17 C5 C C4 R N N 0 -0.942 -0.258 -0.31
18 N5 N N4 N N N 0 -1.869 0.477 0.555
19 C10 C C10 N N N 0 -3.127 0.723 0.138
20 O10 O O10 N N N 0 -3.491 0.337 -0.952
21 C11 C C11 N N N 0 -4.081 1.478 1.027
22 O11 O O11 N N N 0 -5.342 1.611 0.368
23 HO9 H HO8 N N Y 0 4.019 4.676 -0.253
24 H91 H H8 N N N 0 1.855 4.025 0.52
25 H92 H H8A N N N 0 2.065 3.697 -1.217
26 H8 H H7 N N N 0 2.816 1.371 -0.637
27 HO8 H HO7 N N Y 0 2.018 2.125 2.05
28 H7 H H6 N N N 0 0.094 2.187 0.475
29 HO7 H HO6 N N Y 0 0.892 1.433 -2.212
30 H6 H H5 N N N 0 0.676 -0.105 1.106
31 HO1B H HO9B N N N 0 0.923 -2.221 2.739
32 HO2 H HO1 N N Y 0 3.174 -2.475 -1.208
33 H31 H H2 N N N 0 -0.286 -2.308 -2.014
34 H32 H H2A N N N 0 -0.208 -3.59 -0.78
35 H4 H H3 N N N 0 -0.997 -2.014 0.942
36 HO4 H HO3 N N Y 0 -2.65 -3.075 -0.421
37 H5 H H4 N N N 0 -1.133 -0.001 -1.352
38 HN5 H HN4 N N N 0 -1.578 0.785 1.427
39 H111 H H11 N N N 0 -4.215 0.933 1.962
40 H112 H H11A N N N 0 -3.675 2.467 1.238
41 HO11 H HO11 N N N 0 -6.007 2.088 0.884