Chemical Components in the PDB

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  • 0MK (Stereoisomer)
  • ARA (Stereoisomer)
  • LXC (Stereoisomer)
  • ARB (Stereoisomer)
  • RIP (Stereoisomer)
  • XYS (Stereoisomer)
  • 64K (Stereoisomer)
  • XYP (Stereoisomer)
  • HSY (Stereoisomer)

PDBeChem : Atoms of Molecule

 Molecule : LDY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 20


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C5 C C5 N N N 0 1.232 -1.065 0.872
2 O5 O O5 N N N 0 -0.012 -1.579 0.391
3 C1 C C1 S N N 0 -1.067 -0.615 0.358
4 C2 C C2 S N N 0 -0.682 0.527 -0.586
5 O2 O O2 N N N 0 -1.71 1.52 -0.578
6 C3 C C3 S N N 0 0.635 1.15 -0.112
7 O3 O O3 N N N 0 0.456 1.717 1.187
8 C4 C C4 R N N 0 1.709 0.059 -0.052
9 O4 O O4 N N N 0 1.934 -0.462 -1.363
10 O1 O O1 N N Y 0 -2.265 -1.237 -0.11
11 H5 H H5 N N N 0 1.099 -0.675 1.881
12 H5A H H5A N N N 0 1.974 -1.864 0.885
13 H1 H H1 N N N 0 -1.23 -0.219 1.36
14 H2 H H2 N N N 0 -0.559 0.139 -1.597
15 HO2 H HO2 N N N 0 -2.575 1.193 -0.864
16 H3 H H3 N N N 0 0.943 1.927 -0.811
17 HO3 H HO3 N N N 0 1.252 2.129 1.55
18 H4 H H4 N N N 0 2.635 0.482 0.338
19 HO4 H HO4 N N N 0 2.605 -1.159 -1.399
20 HO1 H HO1 N N N 0 -2.568 -1.972 0.441