Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : L29

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 116


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -7.572 4.221 -0.533
2 C10 C C10 N Y N 0 -8.409 0.091 -1.101
3 C11 C C11 N Y N 0 -9.419 0.951 -0.708
4 C12 C C12 N Y N 0 -9.153 2.293 -0.523
5 C17 C C17 R N N 0 -8.29 -2.985 0.951
6 C18 C C18 N N N 0 -9.104 -4.253 0.685
7 C19 C C19 N N N 0 -10.332 -3.903 -0.157
8 C2 C C2 N Y N 0 -8.584 5.091 -0.132
9 C20 C C20 N N N 0 -8.239 -5.265 -0.07
10 C21 C C21 N N N 0 -9.174 -1.946 1.592
11 C24 C C24 N N N 0 -6.365 -2.697 -0.676
12 C25 C C25 N N N 0 -5.47 -1.745 0.12
13 C27 C C27 N N N 0 -3.113 -1.136 0.228
14 C29 C C29 N Y N 0 -1.714 -1.274 -0.232
15 C3 C C3 N Y N 0 -8.307 6.431 0.051
16 C30 C C30 N Y N 0 -1.399 -2.173 -1.254
17 C31 C C31 N Y N 0 -0.094 -2.302 -1.685
18 C32 C C32 N Y N 0 0.908 -1.546 -1.11
19 C33 C C33 N Y N 0 0.607 -0.643 -0.087
20 C34 C C34 N Y N 0 -0.709 -0.504 0.349
21 C35 C C35 N N N 0 1.681 0.166 0.528
22 C38 C C38 N N N 0 4.017 0.834 0.711
23 C39 C C39 N N N 0 5.354 0.493 0.05
24 C4 C C4 N Y N 0 -7.027 6.91 -0.163
25 C45 C C45 N Y N 0 8.633 -0.373 1.238
26 C46 C C46 N Y N 0 8.492 -1.681 0.812
27 C47 C C47 N Y N 0 9.561 -2.342 0.242
28 C48 C C48 N Y N 0 10.783 -1.689 0.096
29 C49 C C49 N Y N 0 10.919 -0.371 0.527
30 C5 C C5 N Y N 0 -6.019 6.051 -0.561
31 C50 C C50 N Y N 0 11.937 -2.395 -0.515
32 C51 C C51 N Y N 0 11.8 -3.712 -0.951
33 C52 C C52 N Y N 0 12.875 -4.364 -1.519
34 C53 C C53 N Y N 0 14.088 -3.713 -1.656
35 C54 C C54 N Y N 0 14.23 -2.406 -1.225
36 C55 C C55 N Y N 0 13.159 -1.742 -0.661
37 C56 C C56 R N N 0 6.78 2.572 0.34
38 C57 C C57 N N N 0 5.547 3.468 0.469
39 C58 C C58 N N N 0 5.13 3.553 1.939
40 C59 C C59 N N N 0 5.878 4.869 -0.049
41 C5A C C5A N Y N 0 9.842 0.282 1.09
42 C6 C C6 N Y N 0 -6.284 4.709 -0.741
43 C60 C C60 N N N 0 7.254 2.573 -1.091
44 C7 C C7 N Y N 0 -7.864 2.78 -0.731
45 C8 C C8 N Y N 0 -6.851 1.909 -1.126
46 C9 C C9 N Y N 0 -7.127 0.568 -1.304
47 H1 H H1 N N N 0 -10.417 0.572 -0.547
48 H10 H H10 N N N 0 -7.462 -3.219 1.62
49 H11 H H11 N N N 0 -9.425 -4.685 1.633
50 H12 H H12 N N N 0 -10.995 -4.767 -0.21
51 H13 H H13 N N N 0 -10.861 -3.068 0.301
52 H14 H H14 N N N 0 -10.016 -3.625 -1.163
53 H15 H H15 N N N 0 -7.391 -5.552 0.551
54 H16 H H16 N N N 0 -8.834 -6.148 -0.304
55 H17 H H17 N N N 0 -7.878 -4.815 -0.995
56 H18 H H18 N N N 0 -9.206 -2.82 3.409
57 H19 H H19 N N N 0 -10.55 -1.26 4.422
58 H2 H H2 N N N 0 -9.942 2.963 -0.217
59 H20 H H20 N N N 0 -6.095 -3.727 -0.445
60 H21 H H21 N N N 0 -6.23 -2.515 -1.742
61 H22 H H22 N N N 0 -5.803 -0.719 -0.034
62 H23 H H23 N N N 0 -5.53 -1.991 1.181
63 H24 H H24 N N N 0 -3.866 -2.509 -1.042
64 H25 H H25 N N N 0 -2.178 -2.767 -1.708
65 H26 H H26 N N N 0 0.145 -2.999 -2.475
66 H27 H H27 N N N 0 1.927 -1.652 -1.451
67 H28 H H28 N N N 0 -0.948 0.196 1.136
68 H29 H H29 N N N 0 3.163 -0.594 -0.608
69 H3 H H3 N N N 0 -9.584 4.718 0.035
70 H30 H H30 N N N 0 3.801 1.893 0.569
71 H31 H H31 N N N 0 4.072 0.614 1.777
72 H32 H H32 N N N 0 5.528 -0.581 0.115
73 H33 H H33 N N N 0 5.329 0.794 -0.997
74 H34 H H34 N N N 0 7.573 2.949 0.986
75 H35 H H35 N N N 0 4.729 3.048 -0.117
76 H36 H H36 N N N 0 5.948 3.974 2.524
77 H37 H H37 N N N 0 4.251 4.192 2.031
78 H38 H H38 N N N 0 4.894 2.555 2.308
79 H39 H H39 N N N 0 6.175 4.809 -1.096
80 H4 H H4 N N N 0 -9.091 7.106 0.362
81 H40 H H40 N N N 0 5.0 5.508 0.043
82 H41 H H41 N N N 0 6.696 5.289 0.537
83 H42 H H42 N N N 0 8.221 4.339 -0.967
84 H43 H H43 N N N 0 8.963 4.379 -3.138
85 H44 H H44 N N N 0 7.544 -2.186 0.925
86 H45 H H45 N N N 0 9.451 -3.364 -0.09
87 H46 H H46 N N N 0 11.864 0.14 0.416
88 H47 H H47 N N N 0 9.945 1.305 1.421
89 H48 H H48 N N N 0 10.853 -4.221 -0.844
90 H49 H H49 N N N 0 12.77 -5.384 -1.857
91 H5 H H5 N N N 0 -6.815 7.959 -0.018
92 H50 H H50 N N N 0 14.927 -4.226 -2.101
93 H51 H H51 N N N 0 15.179 -1.902 -1.334
94 H52 H H52 N N N 0 13.269 -0.721 -0.329
95 H6 H H6 N N N 0 -5.022 6.431 -0.727
96 H7 H H7 N N N 0 -5.495 4.038 -1.048
97 H8 H H8 N N N 0 -5.851 2.282 -1.289
98 H9 H H9 N N N 0 -6.341 -0.108 -1.606
99 N16 N N16 N N N 0 -7.766 -2.467 -0.314
100 N22 N N22 N N N 0 -9.524 -2.066 2.888
101 N26 N N26 N N N 0 -4.084 -1.882 -0.335
102 N37 N N37 N N N 0 2.952 0.032 0.102
103 N40 N N40 N N N 0 6.434 1.205 0.738
104 N61 N N61 N N N 0 7.994 3.601 -1.554
105 O14 O O14 N N N 0 -8.336 -1.937 -2.656
106 O15 O O15 N N N 0 -10.083 -1.828 -0.873
107 O22 O O22 N N N 0 -10.354 -1.09 3.49
108 O23 O O23 N N N 0 -9.571 -1.003 0.941
109 O28 O O28 N N N 0 -3.387 -0.35 1.113
110 O36 O O36 N N N 0 1.417 0.95 1.418
111 O42 O O42 N N N 0 6.404 -0.543 2.48
112 O43 O O43 N N N 0 7.809 1.505 2.765
113 O61 O O61 N N N 0 8.44 3.602 -2.898
114 O62 O O62 N N N 0 6.971 1.651 -1.825
115 S13 S S13 N N N 0 -8.756 -1.62 -1.337
116 S41 S S41 N N N 0 7.264 0.465 1.965