Chemical Components in the PDB

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  • 0MK (Stereoisomer)
  • ARA (Stereoisomer)
  • ARB (Stereoisomer)
  • LDY (Stereoisomer)
  • LXC (Stereoisomer)
  • RIP (Stereoisomer)
  • XYP (Stereoisomer)
  • XYS (Stereoisomer)

PDBeChem : Atoms of Molecule

 Molecule : HSY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 20


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C5 C C5 R N N 0 -1.472 0.65 0.281
2 C4 C C4 S N N 0 -0.851 -0.73 0.514
3 C3 C C3 R N N 0 0.497 -0.803 -0.21
4 C2 C C2 S N N 0 1.396 0.332 0.291
5 C1 C C1 N N N 0 0.688 1.67 0.066
6 O4 O O4 N N N 0 -1.723 -1.739 0.0030
7 O3 O O3 N N N 0 1.118 -2.061 0.063
8 O2 O O2 N N N 0 2.63 0.317 -0.43
9 O5 O O5 N N N 0 -0.572 1.66 0.74
10 O51 O O51 N N Y 0 -1.719 0.831 -1.115
11 H5 H H5 N N N 0 -2.411 0.723 0.829
12 H4 H H4 N N N 0 -0.699 -0.885 1.583
13 H3 H H3 N N N 0 0.34 -0.698 -1.283
14 H2 H H2 N N N 0 1.593 0.198 1.355
15 H1 H H1 N N N 0 1.304 2.478 0.46
16 H1A H H1A N N N 0 0.527 1.822 -1.001
17 HO4 H HO4 N N N 0 -2.599 -1.748 0.414
18 HO3 H HO3 N N N 0 1.978 -2.176 -0.365
19 HO2 H HO2 N N N 0 3.249 1.011 -0.163
20 H10 H H10 N N Y 0 -2.114 1.686 -1.337