Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : H2B

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 30


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -1.142 -0.046 -2.792
2 C2 C C2 N N N 0 -0.037 0.048 -3.536
3 N2 N N2 N N N 0 -0.189 0.096 -4.898
4 N3 N N3 N N N 0 1.19 0.098 -3.054
5 C4 C C4 N N N 0 1.438 0.04 -1.738
6 O4 O O4 N N N 0 2.573 0.092 -1.301
7 C4A C C4A N N N 0 0.259 -0.088 -0.834
8 C8A C C8A N N N 0 -1.079 -0.104 -1.483
9 N5 N N5 N N N 0 0.373 -0.176 0.442
10 N8 N N8 N N N 0 -2.185 -0.174 -0.683
11 C6 C C6 R N N 0 -0.79 -0.339 1.314
12 C7 C C7 N N N 0 -2.025 0.321 0.697
13 C9 C C9 R N N 0 -0.498 0.305 2.67
14 O9 O O9 N N N 0 -1.626 0.137 3.53
15 C10 C C10 S N N 0 0.727 -0.361 3.298
16 C11 C C11 N N N 0 1.019 0.283 4.655
17 O10 O O10 N N N 0 1.855 -0.192 2.438
18 H22 H 2H2 N N N 0 0.59 0.165 -5.471
19 H21 H 1H2 N N N 0 -1.076 0.062 -5.289
20 H8 H H8 N N N 0 -3.028 -0.53 -1.004
21 H6 H H6 N N N 0 -0.985 -1.402 1.456
22 H71 H 1H7 N N N 0 -2.908 0.065 1.282
23 H72 H 2H7 N N N 0 -1.893 1.403 0.684
24 H9 H H9 N N N 0 -0.302 1.368 2.532
25 H9O1 H 1H9O N N N 0 -1.765 -0.815 3.626
26 H10 H H10 N N N 0 0.531 -1.424 3.436
27 H113 H 3H11 N N N 0 1.892 -0.191 5.102
28 H112 H 2H11 N N N 0 1.215 1.347 4.516
29 H111 H 1H11 N N N 0 0.158 0.155 5.311
30 H1O1 H 1H1O N N N 0 1.994 0.759 2.342