Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : H0Y

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O82 O O82 N N N 0 -0.959 3.677 0.125
2 C28 C C28 N N N 0 -2.267 3.997 0.108
3 O81 O O81 N N N 0 -2.607 5.163 0.131
4 C24 C C24 N Y N 0 -3.29 2.928 0.06
5 N23 N N23 N Y N 0 -2.911 1.657 0.034
6 C25 C C25 N Y N 0 -4.642 3.267 0.047
7 C26 C C26 N Y N 0 -5.593 2.259 0.0020
8 C27 C C27 N Y N 0 -5.163 0.944 -0.029
9 C22 C C22 N Y N 0 -3.794 0.673 -0.0090
10 C19 C C19 N Y N 0 -3.323 -0.734 -0.037
11 C20 C C20 N Y N 0 -4.238 -1.776 -0.188
12 C21 C C21 N Y N 0 -3.805 -3.086 -0.212
13 C16 C C16 N Y N 0 -2.458 -3.384 -0.089
14 C15 C C15 N N N 0 -2.025 -4.824 -0.113
15 C14 C C14 N N N 0 -0.56 -4.956 -0.522
16 C13 C C13 N N N 0 0.306 -4.091 0.403
17 C18 C C18 N Y N 0 -1.967 -1.02 0.081
18 C17 C C17 N Y N 0 -1.536 -2.346 0.058
19 C12 C C12 N N N 0 -0.093 -2.648 0.178
20 N11 N N11 N N N 0 0.799 -1.709 0.094
21 N10 N N10 N N N 0 2.159 -2.023 0.211
22 C8 C C8 N Y N 0 3.108 -1.024 0.121
23 S9 S S9 N Y N 0 4.844 -1.274 0.25
24 C4 C C4 N Y N 0 5.122 0.451 0.02
25 C3 C C3 N Y N 0 6.301 1.191 -0.022
26 C2 C C2 N Y N 0 6.257 2.554 -0.217
27 N7 N N7 N Y N 0 2.848 0.223 -0.074
28 C5 C C5 N Y N 0 3.884 1.082 -0.135
29 C6 C C6 N Y N 0 3.864 2.479 -0.335
30 C1 C C1 N Y N 0 5.035 3.192 -0.373
31 H82 H H82 N N N 0 -0.328 4.41 0.156
32 H25 H H25 N N N 0 -4.945 4.304 0.073
33 H26 H H26 N N N 0 -6.647 2.495 -0.0070
34 H27 H H27 N N N 0 -5.879 0.136 -0.064
35 H20 H H20 N N N 0 -5.291 -1.557 -0.285
36 H18 H H18 N N N 0 -1.252 -0.219 0.193
37 H21 H H21 N N N 0 -4.522 -3.885 -0.328
38 H151 H H151 N N N 0 -2.158 -5.254 0.88
39 H152 H H152 N N N 0 -2.644 -5.372 -0.823
40 H141 H H141 N N N 0 -0.252 -5.998 -0.44
41 H142 H H142 N N N 0 -0.439 -4.621 -1.552
42 H131 H H131 N N N 0 0.129 -4.368 1.443
43 H132 H H132 N N N 0 1.36 -4.227 0.158
44 H10 H H10 N N N 0 2.434 -2.941 0.356
45 H3 H H3 N N N 0 7.253 0.696 0.1
46 H2 H H2 N N N 0 7.173 3.125 -0.249
47 H1 H H1 N N N 0 5.005 4.261 -0.526
48 H6 H H6 N N N 0 2.92 2.989 -0.458