Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : EPA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -1.415 0.213 -7.499
2 OA O OA N N N 0 -2.089 -0.569 -8.356
3 OB O OB N N N 0 -1.727 1.372 -7.368
4 C2 C C2 N N N 0 -0.27 -0.354 -6.701
5 C3 C C3 N N N 0 0.32 0.738 -5.808
6 C4 C C4 N N N 0 1.483 0.162 -4.998
7 C5 C C5 N N N 0 2.065 1.238 -4.119
8 C6 C C6 N N N 0 2.013 1.119 -2.815
9 C7 C C7 N N N 0 1.223 -0.0030 -2.193
10 C8 C C8 N N N 0 2.149 -0.886 -1.396
11 C9 C C9 N N N 0 1.869 -1.171 -0.148
12 C10 C C10 N N N 0 0.542 -0.765 0.437
13 C11 C C11 N N N 0 -0.116 -1.966 1.068
14 C12 C C12 N N N 0 -0.524 -1.911 2.311
15 C13 C C13 N N N 0 -0.42 -0.621 3.083
16 C14 C C14 N N N 0 -1.765 -0.274 3.666
17 C15 C C15 N N N 0 -1.878 -0.013 4.944
18 C16 C C16 N N N 0 -0.643 0.115 5.798
19 C17 C C17 N N N 0 -0.69 1.415 6.559
20 C18 C C18 N N N 0 -0.528 1.42 7.858
21 C19 C C19 N N N 0 -0.118 0.158 8.572
22 C20 C C20 N N N 0 1.105 0.44 9.446
23 HOA H HOA N N N 0 -2.824 -0.205 -8.869
24 H21 H 1H2 N N N 0 0.498 -0.723 -7.38
25 H22 H 2H2 N N N 0 -0.631 -1.174 -6.081
26 H31 H 1H3 N N N 0 -0.447 1.107 -5.129
27 H32 H 2H3 N N N 0 0.681 1.558 -6.429
28 H41 H 1H4 N N N 0 2.251 -0.207 -5.677
29 H42 H 2H4 N N N 0 1.122 -0.658 -4.378
30 H51 H 1H5 N N N 0 2.525 2.108 -4.563
31 H61 H 1H6 N N N 0 2.536 1.825 -2.187
32 H71 H 1H7 N N N 0 0.746 -0.59 -2.977
33 H72 H 2H7 N N N 0 0.46 0.411 -1.534
34 H81 H 1H8 N N N 0 3.042 -1.284 -1.854
35 H91 H 1H9 N N N 0 2.591 -1.696 0.46
36 H101 H 1H10 N N N 0 -0.098 -0.372 -0.351
37 H102 H 2H10 N N N 0 0.698 0.0020 1.195
38 H111 H 1H11 N N N 0 -0.251 -2.871 0.494
39 H121 H 1H12 N N N 0 -0.935 -2.791 2.784
40 H131 H 1H13 N N N 0 -0.097 0.176 2.414
41 H132 H 2H13 N N N 0 0.305 -0.736 3.888
42 H141 H 1H14 N N N 0 -2.637 -0.241 3.029
43 H151 H 1H15 N N N 0 -2.855 0.11 5.387
44 H161 H 1H16 N N N 0 0.241 0.098 5.162
45 H162 H 2H16 N N N 0 -0.6 -0.715 6.503
46 H171 H 1H17 N N N 0 -0.859 2.343 6.032
47 H181 H 1H18 N N N 0 -0.687 2.33 8.419
48 H191 H 1H19 N N N 0 0.128 -0.609 7.838
49 H192 H 2H19 N N N 0 -0.94 -0.188 9.198
50 H201 H 1H20 N N N 0 1.401 -0.473 9.962
51 H202 H 2H20 N N N 0 1.927 0.787 8.82
52 H203 H 3H20 N N N 0 0.858 1.208 10.179