Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DB7

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -0.662 1.538 -0.057
2 C2 C C2 N Y N 0 0.711 1.667 0.225
3 C3 C C3 N Y N 0 1.32 2.915 0.121
4 C4 C C4 N Y N 0 0.576 4.017 -0.257
5 C5 C C5 N Y N 0 -0.774 3.89 -0.535
6 C6 C C6 N Y N 0 -1.394 2.658 -0.442
7 C7 C C7 N N N 0 -1.322 0.219 0.049
8 C14 C C14 N N N 0 4.565 -1.237 -0.493
9 C8 C C8 N N N 0 1.502 0.486 0.63
10 C13 C C13 N N N 0 3.341 -1.019 0.399
11 C15 C C15 N N N 0 5.331 -2.473 -0.015
12 C16 C C16 N N N 0 6.554 -2.691 -0.907
13 O9 O O9 N N N 0 2.614 0.153 -0.054
14 O11 O O11 N N N 0 1.149 -0.185 1.579
15 O12 O O12 N N N 0 -0.661 -0.775 0.275
16 O10 O O10 N N N 0 -2.656 0.119 -0.106
17 C17 C C17 N N N 0 -3.236 -1.207 0.011
18 C18 C C18 N N N 0 -4.75 -1.122 -0.193
19 C19 C C19 N N N 0 -5.361 -2.519 -0.07
20 C20 C C20 N N N 0 -6.875 -2.434 -0.274
21 H1 H H1 N N N 0 2.372 3.022 0.336
22 H2 H H2 N N N 0 1.05 4.985 -0.333
23 H3 H H3 N N N 0 -1.345 4.758 -0.829
24 H4 H H4 N N N 0 -2.448 2.566 -0.66
25 H5 H H5 N N N 0 2.691 -1.893 0.345
26 H6 H H6 N N N 0 3.664 -0.871 1.429
27 H7 H H7 N N N 0 4.241 -1.386 -1.523
28 H8 H H8 N N N 0 5.214 -0.364 -0.438
29 H9 H H9 N N N 0 5.654 -2.324 1.015
30 H10 H H10 N N N 0 4.681 -3.346 -0.069
31 H11 H H11 N N N 0 7.1 -3.571 -0.567
32 H12 H H12 N N N 0 6.231 -2.84 -1.937
33 H13 H H13 N N N 0 7.204 -1.817 -0.853
34 H14 H H14 N N N 0 -2.804 -1.861 -0.747
35 H15 H H15 N N N 0 -3.025 -1.61 1.001
36 H16 H H16 N N N 0 -5.182 -0.468 0.565
37 H17 H H17 N N N 0 -4.961 -0.719 -1.184
38 H18 H H18 N N N 0 -4.928 -3.173 -0.827
39 H19 H H19 N N N 0 -5.15 -2.922 0.921
40 H20 H H20 N N N 0 -7.307 -1.781 0.484
41 H21 H H21 N N N 0 -7.086 -2.031 -1.264
42 H22 H H22 N N N 0 -7.31 -3.43 -0.186