Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : D6X

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C22 C C1 N Y N 0 7.435 1.106 -0.339
2 C23 C C2 N Y N 0 7.504 -0.211 0.109
3 C21 C C3 N Y N 0 6.233 1.711 -0.545
4 C17 C C4 N Y N 0 3.784 1.593 -0.506
5 C24 C C5 N Y N 0 6.374 -0.931 0.349
6 C16 C C6 N Y N 0 2.673 0.847 -0.254
7 C20 C C7 N Y N 0 5.047 1.0 -0.304
8 C19 C C8 N Y N 0 5.115 -0.342 0.142
9 C15 C C9 N Y N 0 2.806 -0.475 0.194
10 C8 C C10 N Y N 0 -2.099 -1.046 0.389
11 C6 C C11 N Y N 0 -3.943 0.025 0.797
12 C2 C C12 N Y N 0 -6.095 0.584 -0.749
13 C1 C C13 N Y N 0 -5.062 -0.12 -1.281
14 C3 C C14 N Y N 0 -6.021 1.003 0.585
15 C13 C C15 N N N 0 -5.111 -0.585 -2.713
16 C14 C C16 N N N 0 -7.159 1.785 1.189
17 C10 C C17 N N N 0 -0.737 -1.657 0.595
18 C11 C C18 N N N 0 0.341 -0.628 0.247
19 N18 N N1 N Y N 0 3.989 -1.026 0.373
20 N7 N N2 N Y N 0 -2.787 -0.384 1.309
21 N9 N N3 N Y N 0 -2.783 -1.084 -0.731
22 N4 N N4 N Y N 0 -4.965 0.718 1.313
23 N5 N N5 N Y N 0 -3.983 -0.399 -0.501
24 N12 N N6 N N N 0 1.665 -1.222 0.448
25 H1 H H1 N N N 0 8.347 1.656 -0.521
26 H2 H H2 N N N 0 8.47 -0.668 0.269
27 H3 H H3 N N N 0 6.192 2.733 -0.892
28 H6 H H6 N N N 0 1.691 1.273 -0.399
29 H4 H H4 N N N 0 3.7 2.612 -0.854
30 H5 H H5 N N N 0 6.445 -1.952 0.695
31 H7 H H7 N N N 0 -6.962 0.818 -1.348
32 H13 H H13 N N N 0 -7.652 2.369 0.412
33 H8 H H8 N N N 0 -6.05 -0.265 -3.167
34 H9 H H9 N N N 0 -4.276 -0.153 -3.264
35 H10 H H10 N N N 0 -5.044 -1.672 -2.745
36 H11 H H11 N N N 0 -7.877 1.096 1.635
37 H12 H H12 N N N 0 -6.773 2.454 1.958
38 H14 H H14 N N N 0 -0.629 -1.958 1.637
39 H15 H H15 N N N 0 -0.629 -2.529 -0.049
40 H16 H H16 N N N 0 0.232 -0.327 -0.795
41 H17 H H17 N N N 0 0.232 0.244 0.891
42 H18 H H18 N N N 0 1.744 -2.138 0.758