Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CDR

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 21


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1 O OGL N N Y 0 2.888 0.313 0.09
2 C1 C C1 R N N 0 1.563 -0.007 -0.337
3 C2 C C2 N N N 0 1.137 -1.342 0.279
4 C3 C C3 N N N 0 -0.306 -1.65 -0.134
5 C4 C C4 S N N 0 -1.208 -0.493 0.304
6 O4 O O4 N N N 0 -2.545 -0.734 -0.14
7 C5 C C5 R N N 0 -0.692 0.81 -0.313
8 O5 O O1 N N N 0 0.664 1.02 0.087
9 C6 C C6 N N N 0 -1.553 1.979 0.169
10 HO1 H HOG N N Y 0 3.224 1.148 -0.263
11 H1 H H1 N N N 0 1.54 -0.085 -1.424
12 H2 H H21 N N N 0 1.795 -2.135 -0.078
13 H22 H H22 N N N 0 1.199 -1.279 1.366
14 H3 H H31 N N N 0 -0.358 -1.763 -1.217
15 H32 H H32 N N N 0 -0.635 -2.571 0.346
16 H4 H H4 N N N 0 -1.195 -0.412 1.391
17 HO4 H HO4 N N N 0 -2.934 -1.548 0.209
18 H5 H H5 N N N 0 -0.744 0.743 -1.399
19 H61 H H61 N N N 0 -1.499 2.046 1.256
20 H62 H H62 N N N 0 -1.184 2.907 -0.27
21 H63 H H63 N N N 0 -2.587 1.819 -0.135