Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : BLK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 73


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CT1 C CT1 N N N 0 11.336 2.102 -0.018
2 CT C CT N N N 0 10.265 3.176 0.183
3 CT2 C CT2 N N N 0 10.12 3.477 1.676
4 CT3 C CT3 N N N 0 10.675 4.45 -0.557
5 O2 O O2 N N N 0 8.997 2.699 -0.34
6 CZ C CZ N N N 0 8.492 1.578 0.209
7 O1 O O1 N N N 0 9.095 1.013 1.1
8 NZ N NZ N N N 0 7.319 1.082 -0.231
9 CE C CE N N N 0 6.769 -0.138 0.366
10 CD C CD N N N 0 5.44 -0.482 -0.309
11 CG C CG N N N 0 4.866 -1.756 0.315
12 CB C CB N N N 0 3.537 -2.1 -0.36
13 CA C CA S N N 0 2.964 -3.374 0.263
14 N N N N N N 0 3.853 -4.506 -0.031
15 C C C N N N 0 1.598 -3.645 -0.314
16 O O O N N N 0 1.465 -4.463 -1.193
17 O3P O O3P N N N 0 0.529 -2.978 0.149
18 P P P N N N 0 -0.894 -3.324 -0.519
19 O1P O O1P N N N 0 -1.145 -4.779 -0.419
20 O2P O O2P N N N 0 -0.88 -2.887 -2.068
21 O5' O O5' N N N 0 -2.058 -2.524 0.254
22 C5' C C5' N N N 0 -3.447 -2.7 -0.034
23 C4' C C4' R N N 0 -4.276 -1.793 0.878
24 O4' O O4' N N N 0 -4.031 -0.415 0.55
25 C3' C C3' S N N 0 -5.777 -2.06 0.657
26 O3' O O3' N N N 0 -6.391 -2.498 1.871
27 C2' C C2' R N N 0 -6.347 -0.687 0.226
28 O2' O O2' N N N 0 -7.613 -0.444 0.843
29 C1' C C1' R N N 0 -5.27 0.295 0.763
30 N9 N N9 N Y N 0 -5.286 1.546 0.0010
31 C8 C C8 N Y N 0 -4.495 1.852 -1.066
32 N7 N N7 N Y N 0 -4.775 3.046 -1.5
33 C5 C C5 N Y N 0 -5.762 3.581 -0.742
34 C4 C C4 N Y N 0 -6.106 2.623 0.227
35 N3 N N3 N Y N 0 -7.062 2.907 1.105
36 C2 C C2 N Y N 0 -7.681 4.068 1.071
37 N1 N N1 N Y N 0 -7.393 4.999 0.18
38 C6 C C6 N Y N 0 -6.454 4.804 -0.74
39 N6 N N6 N N N 0 -6.159 5.786 -1.67
40 H1 H H1 N N N 0 12.288 2.459 0.374
41 H2 H H2 N N N 0 11.043 1.194 0.509
42 H3 H H3 N N N 0 11.439 1.887 -1.082
43 H4 H H4 N N N 0 11.072 3.835 2.069
44 H5 H H5 N N N 0 9.357 4.243 1.82
45 H6 H H6 N N N 0 9.828 2.569 2.204
46 H7 H H7 N N N 0 10.779 4.235 -1.621
47 H8 H H8 N N N 0 9.913 5.215 -0.414
48 H9 H H9 N N N 0 11.627 4.808 -0.165
49 H10 H H10 N N N 0 6.838 1.533 -0.942
50 H11 H H11 N N N 0 7.472 -0.96 0.225
51 H12 H H12 N N N 0 6.606 0.021 1.432
52 H13 H H13 N N N 0 4.738 0.34 -0.167
53 H14 H H14 N N N 0 5.604 -0.641 -1.375
54 H15 H H15 N N N 0 5.569 -2.578 0.173
55 H16 H H16 N N N 0 4.703 -1.597 1.38
56 H17 H H17 N N N 0 2.835 -1.279 -0.219
57 H18 H H18 N N N 0 3.701 -2.259 -1.426
58 H19 H H19 N N N 0 2.883 -3.246 1.343
59 H20 H H20 N N N 0 3.944 -4.645 -1.026
60 H21 H H21 N N N 0 4.756 -4.378 0.401
61 H23 H H23 N N N 0 -0.721 -1.944 -2.209
62 H24 H H24 N N N 0 -3.637 -2.44 -1.076
63 H25 H H25 N N N 0 -3.725 -3.74 0.137
64 H26 H H26 N N N 0 -4.016 -1.978 1.92
65 H27 H H27 N N N 0 -5.922 -2.8 -0.13
66 H28 H H28 N N N 0 -7.337 -2.68 1.79
67 H29 H H29 N N N 0 -6.427 -0.622 -0.859
68 H30 H H30 N N N 0 -8.296 -1.087 0.608
69 H31 H H31 N N N 0 -5.422 0.489 1.825
70 H32 H H32 N N N 0 -3.745 1.199 -1.487
71 H33 H H33 N N N 0 -8.454 4.267 1.799
72 H34 H H34 N N N 0 -6.64 6.628 -1.655
73 H35 H H35 N N N 0 -5.471 5.632 -2.337